Lonchura striata domestica (Bengalese finch): 110480311
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Entry
110480311 CDS
T05897
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr03020
RNA polymerase
lsr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110480311 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
110480311 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110480311 (POLR2A)
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110480311 (POLR2A)
Enzymes [BR:
lsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110480311 (POLR2A)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110480311 (POLR2A)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110480311 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
110480311
NCBI-ProteinID:
XP_031363499
LinkDB
All DBs
Position
Unknown
AA seq
1906 aa
AA seq
DB search
MHGGPPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKILRCVCFFCSKLLVDS
NNPKIKDILGKSKGQPKKRLTHVYDLCKGKNICEGGEEMDHKFGVEQPEGDEDLTKEKGH
GGCGRYQPLLLTQILPLFHPNNPIFTPITPSVVMQGSAGTQSPFGVTPKTLWAIPVLFPP
QIHPAPFPRRFGFLTSLSLSNLLINKFWGITPLILGCPQDDLTHKLADIVKINNQLRRNE
QNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNL
MGKRVDFSARTVITPDPNLAIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP
GAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRV
RILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPV
MGIVQDTLTAVRKFTKRDVFLERVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDT
TRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNE
LEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQV
IAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGR
EGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQ
NLATLKPSNKAFEKKFKFDYTNERALRRTLQEELVKDILSNAHIQNELEREFDRMREDRE
VLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPVKVVEGVKELSRKLVIVN
GEDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAIAHPG
EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL
GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV
SRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNS
DENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITE
DGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYH
VISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAA
HGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGMEIPSALPGLGVGGSTGMFFG
SAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDASGFSPGYSPA
WSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSP
TSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY
SPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTS
PKYSPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYS
PTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDDDN
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcgggccgccctcgggcgacagcgcctgcccgctgcgcaccatcaaacgagtc
cagttcgggatcctgagccccgatgagatgaaacggatgtcggtgaccgaggggggcatc
aagtaccccgaaaccaccgaggggggacgccccaaactgggggggctgatggacccccgg
cagggcgtcatcgagaggacggggcgctgccagacctgcgccgggaacatgacggagtgt
ccgggccactttggccacatcgagctggccaagcccgtgttccacgtgggcttcttgggc
aaaaccatgaagatcctgcgctgcgtctgcttcttctgctccaagctgctcgtggactcg
aacaaccccaagatcaaggacatcctgggcaagtccaaggggcagcccaagaagaggctg
acccacgtctacgacctctgcaagggcaagaacatctgcgagggcggcgaggagatggac
cacaagttcggcgtggagcagcccgagggcgacgaggacctcaccaaggagaagggccac
ggcggctgcgggcgctaccagcccttgttgctaacccaaatacttcccctttttcacccc
aataaccccattttcaccccaataaccccatccgtggtcatgcagggctctgccggcacc
cagtccccttttggggtcacccccaagactctttgggctatccctgttttattcccaccc
caaatccaccctgcacctttcccacggcgttttggttttctcacctctttatcgctgtca
aacctcctaatcaataaattctgggggatcaccccactaattttggggtgtccccaggat
gacctgacccacaaactggccgacatcgtcaagatcaacaaccagctgcggcgcaacgag
cagaacggggcggccgcgcacgtcatcgccgaggacgtcaagctgctgcagttccacgtg
gccaccatggtggacaacgagctgcccggcctgccccgggccatgcagaagtcggggcgc
cccctgaagtccctgaagcagcggctgaaggggaaggagggtcgggttcggggcaacctc
atgggcaaacgggtggatttctccgcccgcaccgtcatcacgcccgaccccaacctggcc
atcgatcaggtgggcgtcccccgctccatcgccgccaacatgaccttcgccgagatcgtc
acgcccttcaacatcgacaggctgcaggagctggtgcgcagggggaacagccagtacccg
ggggccaagtacatcatcagggacaacggggacaggatcgacctccgcttccaccccaag
cccagcgacctccacctgcagatcggctacaaggtggaacgtcacatgtgcgacggggac
atcgtcatcttcaaccggcagcccaccctgcacaagatgtccatgatgggtcaccgggtc
aggatcctgccctggtccaccttcaggctgaatctgagcgtcaccacgccctacaacgcc
gactttgacggcgacgagatgaacctgcacctgccgcagtcgctggagacgcgggcggag
atccaggagttggccatggtgcccaggatgatcgtcaccccccagagcaaccggcccgtc
atgggcatcgtgcaggacacgctgacggccgtgcgcaagttcaccaagagggacgtcttc
ctcgagagggtgatcgtggagaacggggagctcatcatgggcatcctgtgcaagaagtcc
ctggggacgtcggccgggtccctggtgcacatctcctacctggagatgggccacgacacc
acgcgcctcttctacagcaacatccagaccgtcatcaacaactggctgctcatcgagggt
cacaccatcggcatcggggactccatcgccgacgccaagacctaccaggacatccagaac
accatcaagaaggccaagcaggacgtgatcgaggtgatcgagaaggcccacaacaacgag
ctggagcccaccccgggcaacaccttgcgccagacctttgagaaccaggtgaaccggatc
ctcaacgacgcccgcgacaagaccggctcttctgcccagaagtccctgtccgagtacaac
aacttcaagtccatggtggtctcgggggccaagggctccaagatcaacatctcccaggtg
atcgcggtggtgggccagcagaacgtggaggggaagcggatcccgttcggcttcaagcac
cggacgctgccgcacttcatcaaggacgactacggccccgagagccgcggcttcgtggag
aactcctacctggccggcctcacgcccaccgagttcttcttccacgccatgggcggccgc
gagggcctcatcgacacggccgtcaaaacggccgagaccgggtacatccagcggcggctg
atcaagtccatggagtcggtgatggtcaagtacgacgccacggtcaggaactccatcaac
caggtggtgcagctgcgctacggcgaggacgggctggccggcgagagcgtcgagttccag
aacctggccaccctcaaaccctccaacaaggccttcgagaagaagttcaagttcgactac
accaacgagcgggcgctgcgccggacgctgcaggaggagctggtcaaggacatcctgtcc
aacgcccacatccagaacgagctggagcgcgagttcgaccgcatgcgcgaggacagggag
gtcctcagggtcatcttccccactggggacagcaaggtggtgctcccctgtaacctgctc
cgcatgatctggaacgcgcagaagatcttccacatcaactcccggctgccctcggacctg
cacccggtcaaggtggtggagggggtgaaggagctgagccggaagctggtgatcgtcaac
ggggaggacccgctgagccggcaggcgcaggagaacgccacgctgctcttcaacatccac
ctgcgctccacgctctgcagccgccgcatggtggaggagttccggctcagcggggaggcc
ttcgactggctgctgggggagatcgagtccaagttcaaccaggccattgcccaccccggg
gaaatggtgggcgctctggccgcgcagtccctgggcgagccggccacgcagatgaccctc
aacaccttccactacgcgggggtgtcggccaagaacgtcacgctgggcgtgccgcgcctc
aaggagctcatcaacatctccaagaagcccaagacgccgtcgctcaccgtgttcctgctg
ggccagagcgcccgcgacgccgagcgcgccaaggacatcctgtgccgcctggagcacacc
acgctgcgcaaggtgacggccaacaccgccatctactacgaccccaaccctcagagcacg
gtggtggccgaggaccaggagtgggtcaacgtctactacgagatgcccgacttcgacgtc
agccgcatctcgccgtggctgctgcgcgtcgagctcgaccgcaagcacatgaccgaccgc
aagctcaccatggagcagatcgccgagaagatcaacgccggctttggtgacgacctcaac
tgcatcttcaacgacgacaacgccgagaagttggtgctgcgcatccgcatcatgaacagc
gacgagaacaagatgcaggaggaggaggaggtggtggacaagatggacgacgacgtcttc
ctgcgctgcatcgagtccaacatgctgacggacatgaccctgcagggcatcgagcagatc
agcaaggtgtacatgcacctgccgcagacggacaacaagaagaagatcatcatcaccgag
gacggggagttcaaggctctccaggagtggatcctggagaccgacggcgtcagcctcatg
cgggtgctgagcgagaaggacgtggaccccgtgcgcaccacctccaacgacatcgtggag
atcttcaccgtgctggggatcgaggcggtgcgcaaggcgctggagcgggagctgtaccac
gtcatctccttcgacggttcctacgtcaactaccggcacctggcgctgctgtgcgacacc
atgacctcgcgcggacacctgatggccatcacccggcacggcgtcaaccgccaggacacc
gggcccctgatgaagtgctccttcgaggagacggtggacgtcctgatggaggcggctgcc
cacggggagagcgaccccatgaagggcgtgtccgagaacatcatgctgggccagctggcc
ccggccggcaccggctgcttcgacctcctgctggacgccgagaagtgcaagcacggcatg
gagatccccagcgccctgcccggcctcggcgtcggcggctccaccgggatgttcttcggc
tcggcccccagccccatgggggggatgtccccggccatgaccccctggaaccagggcgcc
accccggcctacggcgcctggtcccccagcgtgggcagcgggatgaccccgggcggggcc
gggttctcccccagcgccgcctccgacgcctccggcttcagccccggctactccccggcc
tggtcacccacacccggctcgccggggtcccccggcccctccagcccctacatcccctcc
cccggtggggccatgtcccccagctacagcccgacgtcccccgcctacgagccgcggtcg
ccggggggctacaccccacagagccccagctacagccccacctcgcccagctacagcccc
acgtcccccagctacagccccacctcgcccaactacagccccacctcgcccagctacagc
cccacgtcccccagctacagccccacctcgcccagttacagccccacctctcccagttac
agccccacgtccccgagctacagccccacctcgcccagttacagccccacctcgcccagc
tacagccccacctcgcccagctacagcccgacgtcccccagctacagccccacctcgccg
agctacagccccacctcgccgagctacagccccacctcgcccagttacagccccacttct
cccagttacagcccgacctcgcccagttacagcccaacatccccaagctacagccccacc
tcgcccaactacagccccaccagccccaactacaccccgacctctcccagctacagcccc
acctctcccagttacagccccaccagccccaactacaccccgacctcacccaactacagc
cccacctcgcccagctacagccccacgtcacccagctacagccccacctcgcccagttac
tccccgtccagcccccgctacaccccgcagtcgcccacctacacccccagcagccccagc
tacagccccagcagccccagctacagccccacctcccccaagtacaccccgaccagcccc
agctacagccccagctcccccgagtacaccccgacctcgcccaagtacagccccacctcg
cccaagtacagccccacctcgcccaagtacagccccacctcgcccacctacagccccacc
tcgcccaagtacagccccacctcgcccacctacagccccacctcgcccgtctacaccccg
acgtcgcccaagtacagccccacctcgcccacctacagccccacctcgcccaagtacagc
cccacgtcacccacctacagccccacctcgcccaagggctccacctacagccccacgtcc
cccggctacagccccacctcacccacctacagcctcaccagcccggccatcagccccgac
gacagcgacgacgacaactga
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integrated database retrieval system
