Lonchura striata domestica (Bengalese finch): 110482728
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Entry
110482728 CDS
T05897
Symbol
SYNPO
Name
(RefSeq) synaptopodin
KO
K21112
synaptopodin
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
110482728 (SYNPO)
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
110482728
NCBI-ProteinID:
XP_031361886
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All DBs
Position
13:12003874..12016881
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AA seq
1051 aa
AA seq
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MLRTRLQQFCLHPQPSCPMPGEAEQPPCVRGTAKGDTEGDRGCWQENGSREGQRCHQLWD
ASASKPGEQEAQTALLGGKSSGSCQRDLRGLNGDAPQPPLNGSSLALAEEPAAPSKCPGS
APELPPTADSPTDNPSQEWKVVKIQRVLINPDFEPRKTGLSRSASLSEKELKEAKARSQR
IAAQLTTAPGPSSKGVLLFHRRRQRVEGLTGAGHGGGLPLSPAPQPRQGAMEESQPQSMK
PEPDQPGKPGEGMLANASPCQELPAEAQQVPLSVYLKENMASATTNGVQEQAASGMERGL
EGLGNAGAPAGPNSAALVLPRSPEEGKNIKVPGQVPGQVPSEVPSAPAGTATGMAPPAGQ
QQNGTQGRQYYEVHLTLAKPKPVKNRTARPFGTQASPASAQPAEEPPAPELPPPPTYAET
LSSPPPLTRVRSPPAYSALYPTQEQKMLPDPLLACGVSGPNPLPKTGILEESAARRASRK
SMFTFLEKPKLSPNPDLLDLVQSADSRKKQKEQGEPSAEDEPFALGAEAANFVPNSTGRG
VQHLPPAEDAPAWSSCLKSPTIQPKKKPQPSHILTEARGKGAELFARRQSRMEKFIIEAP
SQPELLRSPSPTMSLPPSWKYDNNAYLSPMVSRHPSKSPCRPSKTPPASLYGNNLTENEV
SQKELEISRHQPYQLQSSLFILSPSKGPARSMPQEVPPPRPSLPDSYSYPQQASCPVSPL
PPSPVWHPPVAPSPAQSAASPFRSAAGAPAPAHESRASAGAAAEALPASPCHPLPRARPG
FQAPRPSYSTRNAGIEPQDRRSSLPASPTWTPRLARRPGSLDGWASPASVPELDEGPPTS
PPWSERSLSPLRQDAEPRASRQMQARLARNIINAARRKSSSPKAGGLESCRPFTPISAGP
PSLPQSPRLGPRAPQAASGVLGSLGSPSPTHKSPLRSPRAGSPQFCASPGMPRAAWAEGR
RLLLPSSASSCPVPRLSPVPKSPLPSPVVGGRSPAKRCTSRSPTDSDVSLDSEDSGTKSP
GIHSFNLCPRGWTSSLRLKTGGLPSGAPCTS
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgctgaggacaaggctccagcagttctgcctccacccccagcccagctgccccatgcct
ggcgaggctgagcagcccccctgtgtccgtgggacagccaagggggacactgagggggac
aggggctgttggcaggagaatgggagcagagaggggcagagatgccatcagctctgggat
gcttcggcctccaagccaggcgagcaggaggcacagacagcactgctgggagggaaatca
agtgggagctgccagagggacctcagggggctcaatggggatgcaccacaacccccattg
aatggcagcagcctggccttggcagaggagcctgcagccccttccaagtgccctggctct
gccccagagctaccccccacagcagacagccccacagacaatcccagccaggagtggaaa
gtggtgaagatccaacgggtcctcatcaaccctgactttgagccaaggaaaacaggtctc
tcccgcagcgccagcctctcggagaaggagctgaaggaggcgaaggcgcggagccagcgg
atcgcggcccagctcaccacggcgcccggccccagctccaagggcgtgctgctgttccac
cggcgcaggcagcgcgtggaggggctcacgggggccgggcatggcggggggctgcccctg
agccccgcgccccagccccgccaaggcgccatggaggagagccagccgcagagcatgaag
ccggagcctgaccagcctggcaagccaggagagggaatgctggcaaacgcctccccgtgc
caggagcttcctgctgaagcccagcaggtcccactcagcgtttacctgaaggagaacatg
gcatcggccaccaccaacggcgtgcaggagcaggcagccagcgggatggagagagggctg
gaggggctcggaaatgcaggagctcctgcggggccgaactcggcggcgcttgtcctgcca
cggagccccgaggaggggaagaacatcaaagtgcccggtcaggtgcccggacaggtgccc
agcgaggtgcccagcgcgccagcggggacagccacagggatggcacccccagccgggcag
cagcagaacgggacacagggccggcagtactacgaggttcatctcaccctggccaagccc
aagcccgtgaagaaccggacagccagacccttcggcacccaggcatcccctgccagtgcc
cagccggccgaggaacctcctgcccccgagctgcccccaccaccaacctatgcagagacc
ctcagcagccccccacccctcacccgtgtccgctccccccctgcctactcagccctgtac
cccacgcaggagcagaagatgctgccagatcccctcctggcctgcggggtgagcggacca
aaccccttgcccaaaacagggatcctggaggagtcggctgcccggagagccagcagaaag
tccatgttcaccttcttggagaagccaaagctgagcccaaaccccgacctgctggacctg
gttcagagtgcagacagcaggaagaaacagaaggagcagggggagcccagcgccgaggat
gagccctttgccctcggggctgaagctgcaaactttgtccccaacagcacaggcaggggt
gtgcagcacctcccaccggctgaggatgctccggcatggtcctcctgcctcaagtctccc
accatccagcccaagaagaagccgcagcccagccacatcctcactgaagcaagagggaag
ggggctgagctctttgcccgccgacaatccaggatggagaagttcatcattgaggctccc
tcccagcctgagctgctgcggtccccatcacccaccatgtccctgcctccctcctggaag
tatgacaacaacgcttacctgtcacccatggtctccagacacccctccaagagtccctgc
aggccctccaaaacccctcctgcatcgctgtatggcaacaacctcacggagaacgaggtg
tcccagaaggagctggagatctccaggcaccagccttaccagctccagtcttctctcttc
atcctctccccatccaaggggccagcaaggtccatgccccaggaggtgcctccacccaga
ccctctcttcccgactcctactcttacccccagcaagcctcctgcccggtctctccgttg
cctccttccccggtttggcatccccccgtggcgcccagccctgcccagagcgcagccagc
ccgttccgcagcgctgccggggctccggccccggcccacgagagccgggccagcgccgga
gccgcggccgaggcgctgccggcctccccgtgccacccgctgccccgggccaggccgggc
ttccaggcaccccggccctcctactccaccaggaacgccggcatcgagccgcaggacagg
cggtcatccctccctgcatcgcccacctggacgccccggctggcgcggcgcccgggcagc
ctggacggctgggccagcccggcctcggtgcccgagctggacgagggaccccccacgtcc
cccccgtggagcgagaggtccctgtccccgctgcggcaggacgcggagccccgggccagc
cggcagatgcaagcgcggctggccaggaacatcatcaacgctgcccgcaggaagagctcc
tctcccaaagccggggggctggagagctgccggcccttcacccccatctctgccgggccc
cccagcctgccccagtcgccccggctggggccgagagcgccccaggctgccagcggcgtg
ctggggagcctgggcagcccctcgcccacccacaaaagccccctgcgatcgccccgggca
ggcagcccccagttctgtgcctcccccgggatgccccgagccgcctgggcagagggtcgc
cggctcctgctgccatccagcgcgtcttcctgccccgtgcccaggctgtcccccgtcccc
aagagccccctgccatcccccgtggtgggtgggcggtctccagccaagcgttgcacctcc
cggtccccgacggactcggacgtctccctcgactccgaagactcggggaccaagagcccg
ggaatccacagcttcaacctctgtccccggggctggaccagcagcctgcggctgaagacg
gggggtctgccctcaggggctccctgcacctcctag
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