Lonchura striata domestica (Bengalese finch): 110482937
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Entry
110482937 CDS
T05897
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr03013
Nucleocytoplasmic transport
lsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110482937 (UPF1)
03015 mRNA surveillance pathway
110482937 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110482937 (UPF1)
Enzymes [BR:
lsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110482937 (UPF1)
5.6.2.5 RNA 5'-3' helicase
110482937 (UPF1)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110482937 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
110482937 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
SRP54
UvrD_C_2
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-GeneID:
110482937
NCBI-ProteinID:
XP_021408223
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All DBs
Position
28:5659682..5685959
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AA seq
1073 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
APGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQASFGG
ALIWKLPSGVADLFCSLLLCSSADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYL
NRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIAS
VDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLW
NHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGS
VYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPA
AGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPS
QMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagaccccgcccgggccgggccaggcggggccggcgcagggccagggc
gcccccggcgcggggcagggagcgccgggcccgctggaagcgcaggtgaatggtcctgat
gggatcctgcagaacggagctgtggatgagaacgtggccaagaccagccagctcctggca
gagctcaacttcgaggaggatgaggaggacacttactacaccaaggatctccctgtgcac
gcctgcagttactgtggcatccatgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgcaacgggcgtggaaacacctctggcagccacatcgtgaaccacctggtg
agagccaagtgcaaggaggtgactctgcacaaggacgggcccctgggcgagaccgtcctg
gagtgctacaactgcggctgccgcaacgtcttcctgctgggcttcatcccagccaaggct
gactccgtggtggttctgctgtgcaggcagccatgtgccagccagagcagcttgaaggac
atcaactgggacagttcccagtggcagcccctgatccaggaccgctgcttcctctcctgg
ctggtgaagatcccctcggagcaggagcagctccgggcccggcagatcacagcccagcag
atcaacaaactggaggagctctggaaggaaaatccatctgcaaccctcgaggacttggaa
aaacctggtgttgatgaggagccccagcatgtcctgcttagatacgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcctgaacaagaagaga
attgcttatttcactttgccaaagactgattcagatatgcgcctcatgcaaggagatgag
atctgcctgaggtacaagggagacctggctcccctctggaagggaattgggcatgtgatc
aaagttcctgataattatggtgatgagatagccatcgagctgaggagcagcgtgggagct
cccgtggaggtcactcacaacttccaggtggactttgtgtggaaatccacttccttcgac
aggatgcagagtgctctgaagacgtttgcagtggacgagacctcggtgtctgggtacatt
taccacaaactgctgggccacgaggtggaagatgtcatcatcaaatgccagctgccaaaa
cgcttcacagcccagggcctccctgatctcaaccactctcaggtttatgctgtcaagacc
gtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaaacagtgaca
tcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctggtgtgtgcc
cccagcaacatcgctgtggatcagctgacagagaagatccaccagactggcctcaaggtg
gttcgtctgtgtgccaagagccgtgaggccatcgactcccccgtgtccttcctggccctg
cacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcagcagctcaag
gatgagactggagagctttcctctgctgacgagaagcggtaccgggcgctgaagcgcacg
gcggagcgggagctgctgatgaacgctgatgtgatctgctgcacgtgtgtgggagctgga
gaccccaggctggccaagatgcagttccgctccatcctcatcgacgagagcacgcaggcc
accgagccggagtgcatggtgcccgtggtgctgggggccaagcaggcttcatttggaggc
gctttgatatggaaattgccaagtggtgttgctgatttgttctgctccctgttgctgtgc
tcctcagctgacagggtgaagaaaggctttgatttccagtggccccagcctgacaaaccc
atgttcttctacgtgacccagggacaggaggagattgccagctcgggcacctcttacctc
aacaggacggaggctgccaacgtggagaagatcaccacgaagctgctgaaggctggggcc
aagcctgaccagattggcatcatcaccccctacgaggggcagcgctcctacctggtgcag
tacatgcagttcagtggctccctgcacaccaagctctaccaggaagtggaaattgcaagt
gtggacgccttccagggcagggagaaggatttcatcatcctgtcctgtgtgagggccaac
gagcaccagggcattggcttcctcaacgaccccaggaggctcaacgtggccctgacaaga
gccaggtacggggtgatcattgtggggaaccccaaagccctgtccaagcagcccctctgg
aatcacctcctgaattactacaaggagcagaaggtgctggtggaggggcccctgaacaac
ctgcgggagagcctcatgcagttcagcaaaccccgcaagctcgtcaacaccatcaacccc
ggtgcccgtttcatgaccactgccatgtatgatgcacgagaggccatcatccctggctct
gtctacgaccgcagcagccaagggcgtccatccaacatgtacttccaaacccacgaccag
attgggatgatcagtgctggccccagccacgtcactgccatgaacattcccatccccttc
aacctcgtcatgcccccgatgccacccccgggctacttcggccaggccaacggccccgct
gcaggccgtggggctcccaaggggaagacgggccgtggcgggcggcagaaaaaccgattt
gggattcctggcaccagccagtccaacctccccaacagccaggccagccaggacgtggtg
tcccagcccttctcccagggccccctgacccagggctacatctccatgagccagccctca
cagatgagtcagcctgggctctcccagccggaattatcccaggacagttaccttggtgat
gagtttaaatcccagattgacgtggcgctgtcacaggactcaacttaccagggggaacga
gcatatcaacatggtggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
