Lonchura striata domestica (Bengalese finch): 110483449
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Entry
110483449 CDS
T05897
Symbol
COL15A1
Name
(RefSeq) collagen alpha-1(XV) chain
KO
K08135
collagen type XV alpha
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lsr00535
]
110483449 (COL15A1)
Proteoglycans [BR:
lsr00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
110483449 (COL15A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
110483449
NCBI-ProteinID:
XP_021409061
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Position
2:complement(72909946..73029899)
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AA seq
1301 aa
AA seq
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MLSWHAWWTWDLSLLLFGLSIHAGAAAQIIEERGSKRHLDLTELIGVPLPPSVYFVTGYG
GFPAYSFGPDSNIGRLTSAIIPSPFYRDFAIVVTVKPNNDHGGVLFAITDAFQKTIYLGL
RISPVDDSTQRIIMYYTEPGSRISREAASFKVPVMTNRWNRFTVTVEGNDIALFMDCEEY
QRLQFQRPARTLVFESGSGIFVGNAGATGLEKFTGSIQHLTIKSDPRATEDHCEDDDPYA
SGDSSGNGRIQEHDSSEAQEALAPSRLPIRPEDTLAEPVEAPPTILAYLEENDFSGNHRS
EETSEADKFKEQAVMETGQGNSESTTVTQKMLREEDGSGADVLPGVSREEGQKGQEVEDG
STESLGGSGIDVENKEQGPSESPGKLGQLGQPGIPGKNGLPGKNGLQGLPGLKGKAGPKG
EKGDPGEGLPGPPGLPGPTGPSAPSRGLNRLEPEELGSGDSDRETEILRGLPGPPGPPGL
PGLPGNPAPDSGVGPPGSPGEDGASGEQGPAGPQGPPGCDGVVGPPGWKGEKGDQGLPGS
AGPKGDAGVTGSIGPKGEAGPIGSPGKPGPPGPPGPPGPPGPPGLSYSLGFEDMEGSGSI
NLLSESRIPGSRGPKGSAGRPGHRGPLGPKGERGNIGPPGSKGMPGTDGKPGFPGIAGHP
GEMGPKGEKGDPGLRGEPGQDGSSIVGPPGPPGPPGSVIAIPELLLNNTDGISNFAEIKG
LLGPPGPDGKPGLPGFPGPRGPKGDTGLPGSQGPKGQQGEKGEPGAIISADGSLTELLGR
KGEKGEAGVMGPVGPMGPIGPTGPKGELGFPGRPGRPGLNGLRGVKGDRGEALNGLPGLP
GPPGPPGPPGRILFIKGTVFPVPPRPHCKMPVSPPYTGNQEVLNNHGGKTNGDSWELHSS
AHLKGEKGDRGAPGPPGPPLPPSYFSHFINSIKGEKGDNGVTGVKGEKGEPNGGFFLTGP
PGPPGRPGLIGPKGDSVVGPRGPPGLPGLPGLPGYGKIGPPGPPGPPGPPGPPAIYGSGL
IYTAAAAMPGPPGPPGEPGSPATRNLVTTFQNIEGMLEKVHYVAEGTLIYLRETSEVFIR
VQKGWRKLQLGELIPIPADSLPPPAISSHGIQSIPALRPISNMKNGKPALHLVALNFPLS
GDMRADFQCFQQAQLAGLTSTYRAFLSSHLQDLATVVRKTDRHNLPVVNLQGETLFSNWE
SIFDGNGGQFNIHVPIYSFDGRNVMTDSSWPQKIIWHGSTANGIRLVSNYCEAWHTSDMG
AMGQASPLNTGKLLDQKVYSCNNQFIVLCIENSFVSDPQGK
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgctctcgtggcatgcctggtggacctgggacttgtcgctactgctctttggcttgtca
atccatgctggtgcagcagctcagatcatagaagaacgaggctcaaaaagacaccttgac
ctcacggagttaataggagtccctcttcctccttctgtctactttgtcacgggctatgga
gggttcccagcttatagctttggtccagactccaacatcggccggctgaccagtgctatc
ataccatcacctttctacagagattttgctatcgtggtcaccgtgaaaccaaacaatgac
catggaggagtgctctttgcaataacagatgccttccagaaaacaatctacctaggactg
aggatttcacccgttgatgacagcacccagagaataatcatgtactacacagagcctgga
tcccgtatctcccgagaggctgcttcctttaaagtgccagtgatgactaacaggtggaat
agatttacagtgactgttgaggggaatgatattgctttgttcatggactgtgaagagtat
caaaggcttcagtttcaaaggcctgctcgaaccttggtatttgaatctggctctggcata
tttgttggtaatgcaggagccacaggcctggaaaagttcacaggctcaattcaacatctg
acaataaaatctgacccaagggctactgaggatcattgcgaagatgatgacccttatgct
tcaggggacagcagtggcaatggccgcattcaagaacatgacagttctgaggcacaagaa
gcccttgcaccttctcgtcttcccataaggcctgaagatacattggctgagccagtggaa
gcccccccaaccatactggcttatttggaagagaatgatttctctggaaatcacagatca
gaagaaacctcagaagcagataaatttaaagaacaagctgtcatggaaactggacaaggc
aacagtgagtctaccactgtcacacagaaaatgttaagagaagaagatggctctggtgct
gatgttttgccaggagtaagcagagaggagggccagaaaggtcaggaagtagaggatggg
tccacagagtctctaggagggtcaggaatagatgtggaaaataaagaacaaggaccttct
gaatctccaggaaaacttgggcaacttggtcagcctggcattcctggtaaaaatgggcta
cctggtaaaaatggacttcaggggttgccaggactgaaaggaaaagcaggccctaaaggt
gaaaagggtgatcctggcgagggattgccaggaccccctggactaccaggacccacagga
ccatctgctccttccagaggattaaatagactagaacctgaagaattgggttctggagat
tctgatagagagacagagattttaaggggtcttccggggccaccaggccctccaggactg
cctggtcttccaggaaacccagcacctgattcaggtgtaggacctcctgggtcaccagga
gaagatggagcttcaggggagcaaggccctgcaggccctcaaggtcctcctggctgtgat
ggagtggttggccctccaggatggaagggagaaaagggtgatcaaggtctgcctggttct
gctggtccaaagggtgatgctggagttaccggatcaataggtcctaaaggagaagctggt
cctattgggtctcctggaaaacctggaccacctggacctcctgggcctcctggacctcct
ggaccaccaggactaagttacagcttgggatttgaggatatggaaggatcaggtagcatc
aacctgttaagtgaatcaagaattcctggatcaaggggaccaaagggttctgcaggaaga
cctggacatcgtggacccttaggaccaaagggagaaagaggcaacataggtcccccaggt
tcaaaggggatgccaggcacagatggaaaaccaggcttccctggcattgctgggcatccc
ggagaaatgggtccaaaaggagagaaaggtgacccaggacttcggggtgaaccaggacag
gacgggagcagtattgtgggaccacctggaccaccaggaccaccagggtcagtcatagca
atacctgagttacttctcaataacacagatggaatttctaattttgctgaaattaaagga
cttcttgggccaccagggccagatggcaagccaggtctaccaggatttcctggccctcga
ggtccaaaaggtgacactggtttgcctggatcacaaggacctaaaggacaacagggtgaa
aagggagaaccaggagctatcatttctgctgatggatctttaactgaattattaggaaga
aaaggagagaagggtgaagctggagtgatgggaccagtgggaccaatgggaccaatagga
cctactggacccaaaggagagcttggcttcccaggacgcccaggccgtccaggactgaat
ggtctgagaggtgtgaaaggtgatcgaggtgaagcacttaatggtcttcctggcttgcct
ggacccccagggccccccggacctccaggacgtattctttttatcaaaggaacagttttc
ccagtccctcccaggcctcattgcaaaatgccagtgagccctccctatactggaaatcaa
gaagttcttaataaccatggcggcaaaacaaatggagattcctgggaactgcacagttca
gcacacttaaagggagaaaagggagacagaggtgctccaggaccaccaggtccacctctg
cctccatcatatttcagccattttattaatagcataaagggtgaaaaaggagacaatgga
gtcaccggtgtaaaaggagaaaaaggagaaccaaatggagggttttttctgacaggacct
cctggaccacctggaagaccaggattaattggaccaaaaggggactcagttgttgggccc
agaggacctccaggattacctggactacctggcttaccaggttatggaaaaattggacct
cctggcccacctggaccacctggaccaccaggcccccctgcaatatatggctcaggcctc
atttacacagcagcagctgcaatgcctgggccaccaggtcctcctggagagccagggtca
cctgccaccaggaatctggttacgacattccaaaacattgagggtatgttggaaaaagtt
cattatgtagcagaaggtacactaatctatctgagggaaaccagtgaggtttttatccgt
gttcagaaaggatggagaaaattgcagcttggtgagctaattcctatccctgctgacagc
cttcctcctcccgccatatcaagccatggaattcagtctattccagcactgagaccaata
tcaaatatgaagaatggaaaaccagccttgcatctggtggctttgaacttcccattgtct
ggtgacatgcgagcagattttcagtgttttcagcaggcccagcttgctggtttgacatcc
acctacagagccttcctctcatcgcacttgcaagatctggccacagttgtcagaaaaaca
gaccgacacaatttgccagtagtcaatcttcagggagaaacccttttcagtaactgggaa
tctatatttgatggaaatggtggacaattcaacattcatgttccaatatactcctttgat
ggcaggaatgtcatgactgattcatcttggcctcaaaaaataatatggcatggttcaact
gcaaatgggattcgactggttagcaactactgtgaagcctggcacacatctgatatggga
gctatgggacaagcatcgcctctgaacacagggaagcttcttgaccagaaagtatatagc
tgtaataatcaatttattgttctctgtattgaaaacagttttgtatctgatcctcaagga
aaataa
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