Legionella spiritensis: NCTC12082_01543
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Entry
NCTC12082_01543 CDS
T06800
Name
(GenBank) Putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lss
Legionella spiritensis
Brite
KEGG Orthology (KO) [BR:
lss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCTC12082_01543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lss03400
]
NCTC12082_01543
Enzymes [BR:
lss01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCTC12082_01543
DNA repair and recombination proteins [BR:
lss03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCTC12082_01543
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
VEG91111
LinkDB
All DBs
Position
1:1717238..1718110
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AA seq
290 aa
AA seq
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MKNIDLTHPNKLLYPDDGIRKKDVADYYARIADYLLPFVKNRPLTMKRYPEGIHEEGFYN
KHAPDYFPDFIPRYTVPMEKDASQMSMVGADSVQALVYLAGQNTLELHMALSTMDEIKKP
DQMILDFDPSDDDFEKVRNAAFVCKEILDALDLPSFVKTTGSRGVHVHVPLLVACSFKEM
KEIARKIAVKIHEKCPRYTTLEQRKNKRGDKVFIDYLRNDYAMTAIVPYSLRALPKAPVA
TPVDWNELADKSLQPQSYHLKNIFQRLGQKKDPWKLFTKKRIDTRSIRLE
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacattgacctcactcatcctaataaattgctctatccggatgatggcattcgt
aaaaaagacgtagcggactattacgcgcggatagcggattatttattaccctttgttaaa
aaccgtcctttaaccatgaagcgatatcccgaaggcatacatgaagagggattttataac
aaacacgcccccgattatttcccggattttattcctcgttataccgttccgatggaaaaa
gatgcttcacaaatgagtatggtaggggcggattcggtccaggccctggtttatctcgcc
ggacaaaataccctggaactgcatatggcgttatccaccatggatgagataaaaaaaccg
gatcaaatgatccttgactttgacccatccgatgatgattttgaaaaagtccgcaacgcg
gcttttgtctgcaaggagatcctggatgcgcttgatttaccctcttttgtcaaaaccacc
ggatcgcgaggtgtccatgtccatgtaccgcttctcgtcgcttgttcttttaaggaaatg
aaagaaattgcccgaaaaatagcggtaaaaattcatgaaaaatgtccgcgatacaccacc
ctcgaacaacgtaaaaataaacggggagataaggtgtttattgattatctgcgtaatgat
tacgccatgaccgccattgtgccttattccttgcgcgcgctacccaaagccccggtagcc
actcctgtggactggaacgaactggcggacaaatccttgcaaccgcaatcctaccacctg
aaaaacatatttcaacgccttggccaaaagaaagacccatggaaactttttacaaaaaaa
cgtatcgacacccgatctatccgattggagtaa
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