Lactuca sativa (garden lettuce): 111899114
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Entry
111899114 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111899114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111899114
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111899114
Spliceosome [BR:
lsv03041
]
Complex A
U2 snRNP components
U2 related factors
111899114
Complex B
111899114
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
111899114
NCBI-ProteinID:
XP_023750768
LinkDB
All DBs
Position
5:364704001..364708615
Genome browser
AA seq
1079 aa
AA seq
DB search
MEESKHKSSKKDDSLKKDEDLKRGHREKDRRRERERDRDKEKEKERSVDEKYKDKEKHKE
RHRDRDRDREKEKERKEREREKERERERAKEKENREKEREKERVKEREREKEREKERERR
ERREREERDREKMREKRREAERDHNNGVGNDDVRDRDRKRRRRDDDYKEERERKVSSRRS
REDSVDNNSVVKKADENSSDKKEIRSREEDMEEEQRKLDDEMEKRRRRVQEWQEKRRKKE
ESAGETDELKSGKTWTLEGESDDEEAAANNENEEGDMDVDDNVKQKGDIENGNGDVTVNR
SPDTVAPLQNGGDMKEEEEEEIDPLDAFMNSMVIPEVKKLEVPVLDDQKKDGKKIQNNGQ
QRKRSMGRIIPGEDSDSDYPNVENEDDDPLEDEDDDEFMKRVKKTKVEKLSLVDHSKIDY
IPFRKNFYIEVKEIQKMSAEEVAVYRKQLELKIHGKDVPKPIKTWHQTGLTTKILETIRK
LNYDKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPLMSGDGPIGL
IMAPTRELVQQIHSDIRKFTKVMGLTCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDI
LCTSAGKITNLRRVTYLVMDEADRMFDMGFEPQITRILQNTRPDRQTVLFSATFPRQVEV
LARKVLNKPVEIQVGGRSVVNKDISQLVEVRPENERFLRLLELLGEWYEKGKILIFVHSQ
EKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELE
LVINYDVPNHYEDYVHRVGRTGRAGRKGCAVTFLSGEDERYAPDLVKALELSNQVVPDDL
KALADAFMAKVNQGLVQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSED
DDDGVRKAGGDISQQAVLAQAAALAAASQQPQTTGVSLPGVLGVGVAGGNDGAARAAALA
AAMNLQHNLARIQADSLPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ
YVQPGRIPGPGERKLYLFIEGGTEQSVKRAKAELKRVLEDITTQALSLPTSQPGRYSVV
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggaagagtcgaagcataaatctagcaagaaggacgattctttgaagaaagacgaagat
ttgaagagagggcatcgtgagaaggataggcgtagagagagggagagagacagggataaa
gagaaagagaaagaaaggagtgttgatgagaagtacaaagacaaagagaagcataaagag
aggcatagagatagagatagagatagggagaaggagaaggaaaggaaagagagggagaga
gagaaggagcgtgaacgggaacgagcaaaagagaaagagaacagagagaaagagagagaa
aaagagagggtgaaagagagagaaagggagaaagaaagagagaaggagagagagaggagg
gagagaagagaaagggaagaaagagatagggaaaagatgcgagagaaacgtagagaagct
gagagggatcacaataatggtgttggaaatgatgatgtgagagatcgagatagaaagagg
aggaggagagatgatgattacaaggaggagagagaacgtaaggtgtctagcagacgaagc
agggaagatagtgtagataataacagtgtggtgaagaaggctgatgaaaactcttcagat
aagaaagagataaggagccgtgaagaagatatggaggaagaacaacggaaattagatgat
gaaatggagaagagaaggaggagagttcaagaatggcaggaaaaaagaagaaaaaaggag
gaatctgctggggagactgatgaactaaaatcaggtaagacatggactctagaaggtgag
tctgatgatgaagaagctgctgccaataatgagaatgaagaaggtgacatggatgtggat
gacaatgtgaaacagaaaggagacattgaaaatgggaatggagatgtcacggttaacaga
tcaccagatactgtggctcctttgcagaatggtggtgatatgaaagaagaagaagaagag
gaaatcgatcctttggatgctttcatgaattccatggtgataccagaagtcaagaagctg
gaggttcctgttttagacgatcaaaagaaagatggcaagaagattcagaacaatggacag
caacgaaaaagatcaatggggaggatcattcctggtgaagattcggattcggattatcct
aatgtcgaaaatgaggatgacgatcctttggaagatgaagacgatgatgagttcatgaaa
agagtaaagaagacaaaggttgaaaagttatcccttgttgaccattcaaagatcgactac
atcccattcaggaaaaacttttatatcgaagtaaaggaaatccaaaaaatgtctgctgaa
gaagttgctgtttacagaaaacaacttgaactgaaaatacacggaaaagacgtaccaaaa
ccgatcaaaacctggcatcaaaccggactcacaactaaaatcctagaaacaatcagaaag
ctgaattatgacaaaccaatgcctatccaaacacaagcactcccaattataatgagtggt
cgcgattgtataggcgtcgcgaaaaccggttcaggtaaaaccctagcttttgttcttcca
atgttgagacacataaaagaccaaccacctctcatgtctggagacggacccatcggactc
ataatggcacctacacgagaactcgttcaacaaatccacagcgacataagaaaattcaca
aaagtgatgggactcacctgcgtgccggtctacggaggttccggtgttgcccaacaaatc
agcgagctgaaacgcggagctgaaatcgtggtctgcacacctggcagaatgattgacatt
ttatgtacaagtgctggaaagataacaaatctacgtagggtcacgtatttagtcatggac
gaagctgaccgtatgtttgacatgggttttgaacctcaaatcacccggatccttcaaaac
acccgacccgatcgccagactgtacttttctctgccaccttcccccgccaggtggaggtt
ctagcaagaaaagttttaaacaaacccgttgaaatacaggtaggcgggaggtcagttgtg
aacaaagacataagtcaattagttgaagtaagaccagagaacgaaaggttccttaggtta
ttagagctactcggggaatggtatgaaaaaggtaagattttgatttttgtccattcacag
gagaaatgcgacgcgttgtttcgtgatctgttgaaacacgggtacccgtgtttatcgctc
cacggggcgaaagatcaaacggatcgagaatcgacgatttctgattttaaaagtaacgtt
tgcaatctgttgattgcgactagtattgctgctagaggtttggatgtgaaggagcttgag
cttgtgataaattatgatgtgccgaatcattacgaagactacgtgcaccgtgtgggccgt
acggggcgggccggaaggaaagggtgtgcggttacgtttttatcgggtgaagacgaacga
tacgcgccggatctcgtaaaggctctggaactttccaatcaggttgttccggatgatttg
aaagctcttgcggatgcgtttatggcgaaggtgaatcaaggactggttcaagctcatggg
actggttatggtggaagtgggtttaagtttaatgaggaagaggatgaagtgaggaaggct
gcgaaaaaagcacaggcgaaagagtatggatttgaagaagataagtctgattcggaagac
gatgatgatggtgttaggaaggcgggaggggatatttctcaacaggcggttcttgctcag
gcggctgcacttgctgccgccagtcaacaaccccagacaaccggcgtttccctgccaggt
gtacttggtgtcggtgttgcagggggtaatgatggggcggctagggcggcggcgttggcg
gctgcgatgaacttgcagcataacctggcgaggattcaggcggactctttgcctgagcat
tatgaggctgagttggagattaatgatttccctcagaacgcgaggtggaaggtgacacat
aaggagactctgggcccgatttctgagtggactggagctgctattactactaggggtcaa
tatgttcaacctggtaggatcccgggaccaggggagagaaaactttatctgtttattgag
ggaggtactgaacagtctgttaaaagggcaaaagcggaattaaaacgagttctggaagac
atcacaacacaagcattatctcttccaacttcacaaccggggcgttactctgtcgtatga
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integrated database retrieval system
