Lactuca sativa (garden lettuce): 111906612
Help
Entry
111906612 CDS
T05352
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111906612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111906612
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111906612
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111906612
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111906612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
111906612
NCBI-ProteinID:
XP_023758146
LinkDB
All DBs
Position
7:complement(43741498..43744791)
Genome browser
AA seq
695 aa
AA seq
DB search
MDDGEGGLSFDFEGGLDAAPTQPTASVPVIHQSADNGPSASAANLSYSTAPPSAVTDPAS
AAAANANFPGRRSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQD
CVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPSVEEVLQKIQQLTSYNYGNSN
RFFQNRNANQSQQSEKFQFPQGNNDTNQINKPATTDANSLQPGPPSSPHQQQQQQQQVAQ
SQQLVSQLGQSQAQSNGQQVQANKTCIPLPQGTSRYFIVKSCNRENLELSVQQGVWATQR
SNEAKLNEAFDSVENVILIFSVNRTRHFQGCARMTSKTGGSVGGGNWKYEHGTAHYGRNF
CVRWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAI
SVAAETKREEEKAKGYNPENATENPDIVPFEDNEEEEEEEEEESEEEDEGFDQGGFMAGQ
GGRGGGRGGRGMLWPPPHMTLGRGPRPMPGMRGFPPLMMGADGFSYGPDGFPVPDLLNMG
PRGFGPFGPRFSGDFQRPPFPGMMFPGRPGPHQGNFPGGGFGMMMGPGSGGGPGPGRGGP
FMGLGGRGGRPGFPQQQLPPSQNRAKRDQAAAGGGGGSTQGMGQDDEAQIGGESMFKNGE
SESEDEAPRRSRHGEGKKKRRSSEGDAATNSGDGS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggatgacggcgagggaggtctgagcttcgacttcgaaggcggcctagacgcagcaccc
acccaacccaccgcatccgtccccgtaatacaccaatccgctgacaatggaccatcggct
tctgccgctaacctcagctactccactgcccctccgtcggctgtcaccgaccctgcttct
gctgccgccgccaacgccaacttccctggaaggaggagttaccgtcaaaccgtatgccgt
cactggctccggagcctgtgtatgaaaggagaggcctgcgggtttcttcatcaatacgac
aaatcacgaatgcctatttgtcgattcttccgattgtatggagagtgccgcgaacaggac
tgtgtttataagcacaccaacgaagatatcaaggagtgtaacatgtacaagttgggattt
tgtccaaatggtcctgattgtcgatatagacatgcaaagctaccaggacctcctccttca
gtggaagaagtactccaaaagattcagcagctaacatcctacaactatggcaactctaat
aggtttttccaaaaccgaaatgctaaccaatcacagcaatctgaaaagtttcaatttcca
caaggtaacaatgatacaaatcaaattaataaacctgctacaacagatgccaattcattg
cagcctgggcctccttcttcaccacatcagcagcagcagcagcaacaacaggttgcacag
tcacagcaactggttagccaattaggtcaatcccaagcacagtcaaatggtcaacaagtt
caagcaaataaaacttgcataccactgcctcaaggaacatcaaggtattttattgtaaaa
agttgcaatcgtgaaaatcttgagctatcagttcaacaaggagtgtgggccacccaaaga
agcaatgaagctaaactaaatgaagcttttgattctgtggaaaatgttattctaatattt
tcagtcaacaggacacgacattttcaggggtgtgcaagaatgacttccaaaactggtggc
tctgttggtggaggcaactggaaatatgaacatgggactgcacattatggacgcaatttc
tgtgtcagatggctcaagctatgtgaattgtccttccacaaaactcgacacctcaggaat
ccttacaatgagaacttaccagtgaagataagcagagattgtcaagagctagagccatca
attggtgaacaattggcttcacttttatatcttgaaccagatagcgaactcatggcaata
tcggttgctgcagaaacaaagcgagaagaggagaaagcaaaaggatataatcccgaaaat
gccactgaaaatccggatattgtcccatttgaggacaatgaagaggaggaagaagaggaa
gaggaagaaagtgaggaagaagatgaaggttttgatcagggtggttttatggcgggacaa
ggcggcagaggaggaggaaggggcggcagagggatgttatggccgccacctcatatgacc
ttaggaagagggccccgccctatgcctggaatgagaggctttcctcctctcatgatggga
gctgatgggttttcttatgggcctgatgggtttcctgtacccgatcttttaaacatgggc
cctcgtgggtttggcccatttgggcctagattttccggtgactttcaaaggccaccgttt
cctggtatgatgtttcctggccggcctgggccccaccaagggaactttcccgggggtggg
tttgggatgatgatggggcccgggtctggggggggtccaggacctgggcgtggtggcccg
tttatgggtttaggtggaagaggtggccgaccgggttttccacagcagcagcttccacct
tctcagaatcgggctaagagggatcaggcggctgctggtggtggtggtggttccacccag
ggtatgggccaagatgatgaggctcaaattggtggtgaaagtatgtttaaaaatggtgaa
agtgaaagtgaagatgaggcaccgaggaggtctcgacatggtgaagggaagaagaagagg
cggagctctgagggtgatgccgccacaaactccggtgacggaagttag
DBGET
integrated database retrieval system
