Lactuca sativa (garden lettuce): 111916313
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Entry
111916313 CDS
T05352
Name
(RefSeq) ubiquitin C-terminal hydrolase 13
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
111916313
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lsv01002
]
111916313
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsv04121
]
111916313
Enzymes [BR:
lsv01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
111916313
Peptidases and inhibitors [BR:
lsv01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
111916313
Ubiquitin system [BR:
lsv04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
111916313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH
UCH_1
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
111916313
NCBI-ProteinID:
XP_023767721
LinkDB
All DBs
Position
2:200930359..200939352
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AA seq
1117 aa
AA seq
DB search
MTLMTPPPMDAEEDEMLVPHSDFAATEGPQPMEVAPAEAGNAVDAPTVDDPPSARFTWTI
ENFSRLSNKKLYSDVFFVGGYKWRVLIFPKGNNVDHLSMYLDVADSSTLPYGWSRYAQFS
LAVVNQVHNKLSVRKDTQHQFNSRESDWGFTSFMPLSELYDPTRGYLLNDKCIVEADVAV
RKVVDYWSHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGS
IPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTV
VEGTIQQLFEGHNMNYIECINVDYKSTRKESYYDLQLDVKGCRDVYASFDKYVEVERLEG
DNRYHAEQHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDR
EDGKYLSPEADRSVRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSDQWFKFDDERVTKEDM
KRALDEQYGGEEELPQANPGFNNSPFKFTKYSNAYMLVYIRESDKEKIICNVDEKDIAEH
LRIRLKKEQEEKDQKRKEKAEAHLYTIIKVARDDDLRRQIGKDIYFDLVDHDKVHSFRIQ
KQISFALFKEDVAKELGIPVQYQRFWLWAKRQNHTYRPNRPLTPQEEAQSVGHLREVSNK
ANNAELKLFLEVEVGQDLRPISPPEKTKEEILLFFKLYDPFKEELRYVGRLFVKGTGKPI
EILAKLNELAGFAPDEEIELFEEIKFEPNVMCEHIDKKLTFRGSQLEDGDIVCFQKPLKD
EPITETYRYPDVPSFLEYVHNRQVVRFRSLEKPKDDEFSLELSKLNNYDDVVERLAGHLN
LDDPSKIRLTSHNCYSQQPKPQPIKYRGVEHLSDMLAHYNQTSDILYYEVLDIPLPELQG
LKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVINDLKTKVELSNPDAELRLLEVFYHKIY
KIFPLNEKIENINDQYWTLRAEEVPEEEKELGPQDRLIHVYHFMKDTAQNQQVQNFGEPF
FLVIREGETLAEVKLRIQKKLQVPDEEFSKWKFAFLSLGRPTYLQDSDIVSSRFQRRDVY
GAWEQYLGLEHSDNSPKRSYAANQNRHTFEKPVRIYN
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgacactgatgactcctcctcccatggatgcagaggaggacgagatgctagtaccacat
tctgatttcgctgccacagaagggcctcaaccaatggaagttgcaccagcagaagctggc
aatgctgtcgatgcaccaactgttgatgatccaccatcagcacgattcacatggactata
gaaaatttttcgaggctgagtaacaaaaagttgtactctgatgttttctttgtcggaggt
tataaatggcgagtgctcatatttccaaaaggaaacaatgttgaccatctttcaatgtac
cttgatgttgccgattcctcaacattgccatatggttggagtagatatgctcaattcagc
ttagctgtggttaatcaagttcataataagttatcggttagaaaagatacacaacaccag
ttcaattcaagagaaagtgattggggtttcacttcatttatgcctctaagtgagctatat
gaccccactagaggctatcttctcaatgacaaatgtatagttgaagctgatgtggcagtc
cggaaagttgttgattactggtcacatgattcaaagaaggaaacaggttatgttggcctt
aagaatcaaggtgctacttgctatatgaactccttgttacagacattatatcatatccca
tatttcaggaaggctgtgtatcatatgccaacaactgaaaatgatatgccatcagggagc
attcctctggctttgcaaagtttattttataagcttcaatacagtgacacaagtgtcgcc
acaaaagaattgacaaagtcttttggatgggatacatacgactcttttatgcaacacgat
gttcaagaactcaatcgagttctctgtgagaagcttgaagacaaaatgaagggaactgtt
gtggagggtacaattcaacagttatttgaaggacataatatgaactatattgaatgcata
aatgttgactacaaatcaacaagaaaagagtcgtattatgatcttcagcttgatgttaaa
ggttgtcgtgatgtctatgcctcttttgacaagtatgtggaagtagaaaggcttgaaggt
gacaacagatatcatgccgaacaacatgggttacaggatgcaaagaagggcgtattattc
attgattttccccctgttcttcaactccagttgaaacgtttcgaatatgattttatgcgg
gacacgatggtgaagataaatgatcgctatgaattccccttgcaacttgaccttgataga
gaagatggtaaatatttatcacccgaggcagacagaagtgtgcgcaacctttacactctt
cacagtgtattggttcacagtggtggggtacatggtggacattattatgcctacatccga
ccaaccctttctgatcaatggtttaaattcgatgacgaacgtgtaaccaaagaagacatg
aagagggcattagatgagcaatatgggggagaggaggagttacctcaagcgaatcccggg
ttcaataactctccatttaaatttacaaagtattcaaatgcatatatgcttgtgtatata
cgtgaaagtgataaggagaaaataatctgtaacgtggatgagaaggatatagcagagcac
ctacgaataagattgaagaaagaacaagaagaaaaagatcaaaaaagaaaggagaaagca
gaggcacatttatatacgattataaaggttgctcgagatgacgaccttcgtcgacagata
gggaaagatatatattttgatttggtggatcatgacaaagttcacagcttccgcattcaa
aaacaaatatcttttgcccttttcaaggaagatgtggctaaggaattgggtataccagtg
caataccaacgtttctggctatgggcaaaacgccaaaatcacacttacaggccaaatcgt
ccattgacacctcaagaagaagctcagtctgttggacatttgagagaggtgtcaaataag
gctaacaatgctgagcttaagttgttcttggaagtagaagttggacaggatttacgccca
atttctccacctgagaagactaaagaggagattctacttttcttcaaactttatgatccc
tttaaggaggaacttcggtatgttgggaggctatttgtgaaaggcacaggaaagccaata
gaaatactagcaaagctcaatgaactggctggatttgcacctgatgaagaaattgaacta
ttcgaggaaatcaagtttgaacccaatgttatgtgtgaacatattgacaagaagctaact
tttcggggtagtcagcttgaagatggggacatcgtgtgctttcagaagcctcttaaggat
gaaccaattacagaaacatatcgttatcctgatgttccatcttttcttgagtatgttcac
aatcgtcaggttgtacgctttcgttcactggagaagcccaaggatgatgagttttctcta
gaattgtcaaaacttaacaattatgatgatgtggttgaaagacttgctgggcatctaaac
ttagatgatccatctaaaatcaggctcacatctcacaactgctactctcagcaacctaaa
cctcagccaatcaaatatcgtggagttgaacatctctcagacatgctggcccactacaat
cagacttcagacattttgtattatgaagtattggatatccctctgccagaattacaaggt
ctgaaaactctgaaagttgcctttcatcatgctacaaaagatgaagtggtaatacatact
attagattgccaaagcaaagcacagtaggggatgtaatcaatgaccttaagacaaaggtt
gagctgtctaatcctgatgcagagcttcgattacttgaggttttctaccacaaaatctac
aagatattccctctgaatgaaaaaatcgagaacattaacgatcaatactggactttacgt
gctgaggaggttccagaagaagaaaaggagctgggcccacaggatcgtctgatccatgtt
tatcacttcatgaaagacacagctcaaaaccagcaggtccagaactttggggaacccttc
ttcctggtgattcgtgaaggtgagacattagctgaagttaaactacggatacaaaagaag
ttacaggttcccgatgaggagttttccaagtggaagtttgcatttctgtctttggggcgt
cccacataccttcaggattctgatattgtctcaagtcgttttcagagaagagatgtttat
ggtgcttgggaacaatatttgggattagaacactctgacaattcacccaagaggtcatat
gctgccaatcagaaccgacacacatttgagaaaccggttagaatttacaactaa
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integrated database retrieval system
