Lachancea thermotolerans: KLTH0H10406g
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Entry
KLTH0H10406g CDS
T01117
Name
(RefSeq) KLTH0H10406p
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lth
Lachancea thermotolerans
Pathway
lth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KLTH0H10406g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lth03019
]
KLTH0H10406g
03041 Spliceosome [BR:
lth03041
]
KLTH0H10406g
03009 Ribosome biogenesis [BR:
lth03009
]
KLTH0H10406g
03016 Transfer RNA biogenesis [BR:
lth03016
]
KLTH0H10406g
Enzymes [BR:
lth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KLTH0H10406g
Messenger RNA biogenesis [BR:
lth03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
KLTH0H10406g
Spliceosome [BR:
lth03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
KLTH0H10406g
Complex C
U4/U6.U5 tri-SnRNP related factors
KLTH0H10406g
Ribosome biogenesis [BR:
lth03009
]
Eukaryotic type
Pre-60S particles
Helicases
KLTH0H10406g
Transfer RNA biogenesis [BR:
lth03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
KLTH0H10406g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
Death_3
nSTAND3
HTH_Tnp_ISL3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
8294654
NCBI-ProteinID:
XP_002556323
UniProt:
C5E350
LinkDB
All DBs
Position
H:complement(894542..897769)
Genome browser
AA seq
1075 aa
AA seq
DB search
MDNDDLFDVFDEKSTDLPQLEAPPKEPIETNGEAVEEVQDVKKRHRASSEDEPKEDSATA
HDSAKRPKNGKKILEKKKKSEVVPVLADSFEQEASREVNASMGLGAANSVQVEEDGKVKL
SHQVRHQVALPPHYDYKPIGEHKRQNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSA
GKTVVAEYAIAQSMRNKQRVIYTSPIKALSNQKYRELLADFGDVGLMTGDITINPDAGCL
VMTTEILRSMLYRGSEVMREVAWVVFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSAT
IPNAMEFAEWICKIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIHLVVDEKSTFREENFQK
AMASISNQVGDNPGSTNSRGKKGQTYKGGASKGDSKGDIYKIVRMIWKKKYNPVIVFSFS
KRDCEELALKMSKLDFNSEDEKEALTKIFTNAIELLPETDRELPQIKHILPLLRRGIGIH
HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKQFRWVSGG
EYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMR
VEGISPEFMLEHSFFQFQNATSVPLMEKKLTELSAKSESMVIEDEQNIKDYYEIQKTLDG
YSEDIRQIVTHPSNVLSFLQPGRLIEVQVGNANYCWAAVVDCTKRTSKLSAVYSDHESWI
VKVVVNTMYVDAPLNLIKPFNPVFPEGIRPASVGEKSVSTIIPITLNSIKSVGNLRLHMP
KDILAGSQQVAVGKSIKEVRRRFSDKVPVMDPIKNMKIEDEDFQKLLQKSEVLKSRQSSN
PLSGSVRLDDLYQKYNEKVSINSEIRQLKKKIQEAQAVTQLDDLRRRKRVLRRLDFCTPN
DIIELKGRVACEISSGDELLLTELIFNGNFNDLTPEQAAALLSCFAFQERCKEAPRLKPE
LAEPLKNMREVAAKIAKIVKDSKIEIVEKDYVESFRHELMEVVYEWCKGATFTQICKMTD
VYEGSLIRMFKRLEELIKELVEVSNTIGNSMLREKMEAALNLIHRDIVSAGSLYL
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atggataatgacgacttgtttgacgttttcgatgaaaagtctacagacttgcctcagcta
gaagctccgccaaaggaacctatagaaactaatggagaagcagttgaggaggttcaggac
gtgaagaagcgccacagagcctcctccgaagacgaacctaaagaagacagcgcaacagcg
cacgactcagctaaaagacccaaaaatgggaaaaagatcttggaaaagaagaagaaatca
gaagttgttccagtcctagctgattctttcgagcaggaagcctctcgcgaggttaatgcg
tctatggggctaggtgctgccaacagcgtgcaagttgaagaagatgggaaagtcaaacta
tcgcatcaagtcagacaccaggtcgcacttcctccacactatgactacaaacccattggt
gaacacaagcgccaaaatgaagcgaggacgtatccttttacattggacccctttcaggat
accgctatctcatgtattgataggggcgaatcggtcctggtctctgctcacacatctgcg
ggtaagactgtagttgcagagtacgcaattgcgcagtcgatgagaaacaagcaaagagtt
atttatacatcgcccatcaaagctctatccaatcaaaaatacagagagcttcttgctgat
tttggagatgttgggttgatgacaggtgatataactataaaccctgacgcagggtgcctc
gtaatgaccaccgaaattctaagaagtatgttatacaggggtagtgaagttatgagagaa
gtggcttgggttgtttttgatgaagtgcattacatgagagacaaggagcgtggtgtggtc
tgggaagaaactattattctgctgcctgacaaggtccgttacgttttcttgtctgccact
attcctaacgcaatggagtttgctgaatggatctgtaagatacattcccaaccgtgtcat
attgtttacactgatttccgtccaacaccgcttcagcattatctattcccagcacatgga
gatggcatacatctggttgttgacgagaaaagcacgtttagggaggaaaactttcaaaag
gcaatggcatctatcagcaatcaagtgggtgacaacccaggctcaacaaattctagaggc
aagaaaggccagacctacaagggcggcgcctcgaaaggtgactccaaaggcgatatctac
aagattgtgagaatgatatggaagaagaaatacaatcctgtaattgtattttcctttagc
aaaagagactgcgaggagctagctttgaagatgtcaaaacttgactttaactcggaggat
gagaaggaagcgttgactaaaatttttactaacgccattgaacttctccctgagactgac
agagagcttcctcaaataaaacatatattaccgctgctaagaagaggtataggtatccac
cactcgggcctactacctattcttaaagaagtgattgagattttgttccaggagggcttc
ttgaaggttttatttgccacagaaacattctctatcggtttgaatatgcctgcaaaaact
gtcgttttcaccagtgtgaggaaatgggatggcaaacagtttcgttgggtttctggtggt
gagtacatccagatgtcaggccgtgccggtcgtcgtggcctggatgaccgtggtattgtg
attatgatgatcgacgaaaagatggaacctcaagttgccaagggaatggttaaaggccaa
gctgataggctagattctgcctttcacctcgggtataacatgatcttgaacctgatgagg
gtggagggaatatccccagagttcatgctggagcattcgttctttcaatttcagaatgca
acatcggttcctctcatggagaaaaaactcacggaactctccgccaagtcagagagcatg
gtcattgaggatgagcagaacataaaagactattacgaaattcagaagaccctcgatggc
tactctgaagacattcgtcaaatagtcacacatccttcgaatgtactaagcttcttacag
ccaggaaggcttattgaggttcaggtgggcaacgcaaactattgttgggctgccgtggtt
gactgcactaaaagaacaagcaagttgtcagctgtttacagtgaccacgagtcctggatt
gtcaaagttgttgtcaatacaatgtatgtggatgccccattaaaccttatcaaaccattt
aatccagttttccctgaagggataaggccggcaagcgttggcgaaaagtctgtttctact
atcattcccattacgcttaactcgattaaaagtgtgggcaacttgaggcttcatatgccc
aaagacatcttagctgggagtcagcaagttgccgtgggcaagtccatcaaagaagtcaga
agaaggttttcggacaaagtgcccgtcatggaccctataaaaaacatgaagattgaagat
gaagattttcaaaaactgcttcagaaaagcgaagtgttaaagtcaaggcaatcctcaaat
cctttgtcaggttctgtgagattagacgacctttaccagaaatacaatgagaaagtttcc
atcaactcagaaattaggcagttgaagaaaaagattcaagaagcccaagccgtgacacag
ctcgatgacttacgccgtcgtaaaagggttttacgtcgtctcgacttttgcactcctaac
gacatcatagaattgaaaggcagggttgcttgcgagatttccagtggtgatgagcttctt
ttaactgagttgatcttcaacggtaactttaacgacctaaccccagagcaggcggctgca
ttactttcatgcttcgcattccaagagcgctgtaaagaggctccaaggctgaagcctgag
cttgcagaaccgctcaaaaatatgagagaagttgctgcgaagatagcaaaaattgtgaaa
gactcgaaaatcgagattgttgagaaggactacgtggagagtttcagacatgaacttatg
gaagtcgtgtacgaatggtgtaagggtgcaacttttactcagatttgcaagatgacagat
gtctacgaaggctctctcatcagaatgttcaagcgtcttgaagagctaattaaagagctg
gtcgaggtttccaataccatcggaaactctatgcttagggagaaaatggaggctgccttg
aatctgattcacagagacattgtgtctgctggttcgttgtatttgtga
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