Luteimonas granuli: FPZ22_02020
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Entry
FPZ22_02020 CDS
T06154
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lug
Luteimonas granuli
Pathway
lug03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FPZ22_02020 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lug03400
]
FPZ22_02020 (ligD)
Enzymes [BR:
lug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FPZ22_02020 (ligD)
DNA repair and recombination proteins [BR:
lug03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FPZ22_02020 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QDW65825
UniProt:
A0A518N1M8
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All DBs
Position
complement(441152..443602)
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AA seq
816 aa
AA seq
DB search
MSLRDYDRKRRFDATPEPRAGPATRIGHRPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRAGEKRLAVEVEDHPLSYAGFEGEIPEGNYGAGRVQLFDRGHWASDGEPLQAIAA
GRLDFRLSGDKLQGAWTLVRTGKQGRQPQWLLLKRSDAYAADVEADDLVDAPTPARIATG
VGRAPRRRKADATWRRRALKLKGAREGMPVGFEPELCSLRATAPTGDGWLHEIKWDGYRL
MVDMVDGAARLRSRGGLDWNETFPEVARAVEALPVSDAFLDGELVVLGADGHSDFSELQR
VIDGSSKSPLRYLAFDLPGVAGADLRAAPLEERKALLKALLPTEPGLLAYSEHVTGHGPE
VFAETGRRGIEGIICKRAGSAYRGGRGNDWLKVKHESSDEFVIVGYTDPKGSRTGFGSLL
LATREGRGLRYVGRVGTGFDDAMLRDLGARMRRLDRKAATVELPPHIALPLRSVHWIEPA
LVAEIAFRGWGKEGLLRQGAFKRLRIDKRASDVEVPQRVGKAGRRAVDMGEETRITNPDR
VVFEGAGYTKRDVAEYYRAVADWLLPELAGRPLSLLRCPDGTKGQCFFQKHHAESLGDDV
RSIVLKQKSGREPYIYVDDIEGVIDLVQMNTIEFHPWGARVEDPERPDRMVFDLDPGEGT
GWPDVVRAARDLRDHLRKTGLDSFVRLSGGKGVHVVVPIGKGPDWDDVRAFCGGFAEAMA
AQSPTRYVATMSKAKRPGRIFIDWLRNARGATSVASWSLRARRGAPVAVPIRWEELGRVD
GPAAFDLAAARRRAARLRKDPWEGFAGLEQALPRLE
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcgcgactacgaccgcaagcgccgcttcgatgccacgcccgagccgcgcgct
ggacccgccaccaggatcggccaccggccgatcttcgtcgtccagttgcaccacgcgagc
agccgccactatgacttccgcctcgaggccgacggcgtgctcaagagctgggcggtcccc
aagggaccgtcgctgcgggccggggagaagcgcctggcggtggaggtcgaggaccatccg
ctgtcctatgcgggcttcgagggcgagatcccggaaggcaactacggtgccggccgcgtg
caactgttcgatcgcgggcactgggccagcgacggcgagccgctgcaggcgatcgccgcc
ggccggctcgacttccggctcagtggagacaagctccagggcgcctggaccctggtccgc
acgggaaaacagggccgccagccgcagtggctgctgctgaagcgcagcgacgcgtatgcc
gccgacgtcgaggctgacgacctggtggacgcgcccaccccggcgcgcatcgcgaccggg
gtgggccgtgcaccgcgcaggcgaaaggcggacgccacgtggcggcggcgcgcactgaag
ctcaagggggcgcgcgaaggcatgccggtcgggttcgaacccgagctctgcagtctgcgc
gccaccgcgccgaccggcgacggctggcttcacgagatcaagtgggatggctaccgcctg
atggtcgacatggtcgatggcgcggccaggctgcgctcgcgcggaggcctggactggaac
gagaccttccccgaggtcgcgcgcgcggtggaggccttgccggtgtccgacgcctttctg
gacggcgagctggtggtgctgggcgccgacggccatagcgatttttccgaactgcagcgc
gtgatcgacggcagttcgaagtcgcctctgcgctatctggcgttcgacctgcccggcgtg
gcgggcgcggatctgcgcgcggcgccgctggaggagcgcaaggcgctgctcaaggcgctg
ctgccgacggagcccggactgctcgcctacagcgaacacgtgaccgggcatggccccgag
gtcttcgccgagaccggccgccggggcattgagggcatcatctgcaagcgcgccggcagc
gcataccgcggcggccgcggcaacgactggctgaaggtcaagcacgagtccagcgacgag
ttcgtcatcgtgggctataccgatccgaagggcagccgcaccggtttcggctcgctgttg
ctggccacccgcgaagggcgcgggctgcgctacgtggggcgcgtgggcacgggcttcgac
gatgccatgctgcgcgaccttggtgcgcgcatgcgcagactcgaccgcaaggccgccacc
gtcgaactgcctccgcatatcgcgctgccgctgcgctcggtgcactggatcgagccggcg
ctggtggcggagatcgccttccgcggctggggcaaggaaggcctgctgcggcagggcgcg
ttcaagcgcctgcgcatcgacaaacgcgcgtccgacgtggaggtgccgcagcgcgtcggc
aaggcaggcaggagggccgtcgacatgggcgaggaaacccgcatcaccaacccggaccgg
gtggtgttcgagggcgccggctacacgaagcgggacgtcgccgagtactaccgcgccgtg
gccgactggctgctgccggaactggccgggcgcccgctgtccctgcttcgctgcccggac
ggcacgaaaggccagtgcttcttccagaagcatcacgccgagagcctgggcgacgacgtg
cgttcgatcgtgctgaagcagaagagcggcagggagccgtacatctacgtcgacgacatc
gaaggcgtgatcgacctggtgcagatgaacaccatcgaattccatccctggggcgcgcgc
gtcgaggacccggagcggcccgaccgcatggtcttcgacctggacccgggggaggggacg
gggtggcccgacgtggtgcgcgccgcgcgcgacctgcgcgaccacctgcgcaagacgggg
ctggacagcttcgtgcgactgtcgggcggcaagggcgtccatgtggtggtgcccataggc
aagggaccggactgggacgacgtgcgtgccttctgcggcggattcgccgaagccatggcg
gcccagtcgcccacgcgctacgtcgccacgatgtcgaaggccaagcgacccgggcgcatc
ttcatcgactggctgcggaatgcgcgcggcgccaccagcgtggcttcgtggtcgctgcgc
gcgcgccggggcgcgccggtggcggtaccgatccgctgggaggagctggggcgggtggat
ggcccggccgccttcgatctcgccgctgcgcgccggcgcgcggcgcgactgcgcaaggat
ccctgggaaggattcgccggtctcgagcaggcgttgcccaggctggaatga
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