Luteolibacter luteus: HHL09_07690
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Entry
HHL09_07690 CDS
T06562
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
luo
Luteolibacter luteus
Pathway
luo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
luo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HHL09_07690 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
luo03400
]
HHL09_07690 (ligD)
Enzymes [BR:
luo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HHL09_07690 (ligD)
DNA repair and recombination proteins [BR:
luo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HHL09_07690 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
FAD_binding_9
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QJE95671
UniProt:
A0A858RGF4
LinkDB
All DBs
Position
complement(1867915..1870260)
Genome browser
AA seq
781 aa
AA seq
DB search
MPRKPPAKKQPARKPAQLEPYRKKRNFKATPEPAAGRGKKEGRIFVVQEHDASHHHFDFR
LEMNGVLASWAVPKGIPEDIHAKRLAVHVEDHPVSYASFHGVIPKGNYGAGTVDIWDSGT
WEPLDRDWRKAYEKGKLKFILRGKRLEGPYLLARMSAEPNWLLRKLDPETHPTGTPVEPT
AEAVAFVLPQLSRPVPTVPEGKEWVHEIKLDGYRLIAVRKKGEVKLYTRKQLDWTDRFAD
VASRLEKLKGGDFVMDGEAVVFNSKGHSSFSALQEALKSGKGRAITFVAFDLLNLDGRNL
KELPLVERVKYLAKLLPEEQGPLRRSKVWPADSGADLFLQACKLGLEGIISKRASGRYVP
ESRKDWTKSKCRPRQEFVICGYTEPRNSCPAFGALVLASYENGKLIPRGKVGTGFSDESR
RSLLKQMASRKMPRGPFPGEKGVTWIKPDLVAEIEFAELTHEGSIRQGSFLSLREDKPAS
DVHLDAVEKASAKGKGVTVAGIEITHPERVVYSDDSITKLEVARYYERVGELILPHLKDR
PLALLRAPDGIGSDMFFQKSFKAHVPPHVKMSTLDDGTEVISIKNLKGLISLVQFGVIEI
HPWGASLAKPDKPDQIIWDLDPDKSVPWKEVLGAAFLLRDVLEARGLQTLVKTSGGKGLH
VVLHLKRQHSWEVMKSFAKGVAASVAEQNPQRFTITSSFKKRGGKIYIDWLRNGRGATCI
APWALRARPGAAVSMPLEWDQLPGLEAQGFTIREPAETPASWLNIISQSVPKALLAEFAS
L
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgccaagaaagccgccagcaaaaaaacagcccgcaagaaagcccgctcagcttgagccg
taccgcaagaagcggaacttcaaggcgaccccggagcctgccgcgggtcggggcaagaag
gaggggcggatcttcgtcgtgcaggaacatgatgccagccatcatcactttgatttccgt
ctggagatgaatggagtgcttgccagctgggcagtgccgaaaggcattcccgaagacatc
catgccaagcgtctggcggttcacgtggaagatcacccggtaagctatgcttcgtttcac
ggcgtgattcccaaagggaactacggagcgggaaccgtcgacatctgggatagtggaacc
tgggaaccgctcgaccgcgattggcgtaaagcctacgagaagggcaagttgaagtttatc
ctccgcggcaaaagattggaggggccctatcttctcgcaagaatgagtgcagagccaaat
tggctgctgcgaaagctggatccggagacgcatcctaccggaacgccggtcgaacccacc
gcggaagccgtggcgtttgtcctcccgcagctttcccgaccggtgccaacggtgccggaa
ggcaaggaatgggttcacgagatcaagcttgatggctaccgcttgatcgccgtgaggaag
aaaggtgaggtaaagctctacacgcggaagcaactggattggacggatcgtttcgcggat
gtcgcgagccgcctggagaagctgaaggggggggatttcgtgatggatggagaggcggtg
gtcttcaattccaagggtcactcgagtttcagtgcacttcaggaggcattgaagtcgggg
aagggcagggccatcaccttcgttgctttcgatcttttgaacttggatggaaggaatttg
aaagagttgccccttgtggagcgcgtgaagtacttggcgaagttgcttcccgaggagcaa
gggccgttgcgccgctccaaggtttggcccgccgacagcggtgccgatcttttcctccaa
gcgtgcaagctggggctcgaagggatcatcagcaaacgggcaagcgggcgatatgtcccg
gagagccggaaggattggacgaagtcgaaatgccgtccccgccaggagttcgtcatctgt
ggctacacggagcctcgaaattcttgtcccgccttcggggccctggtgttggcatcctat
gagaatgggaagctgatcccgagaggcaaggtgggcactggattctccgacgagtcgcgg
cgctcgctcctcaagcagatggcctcgcggaagatgccgcgcggtccttttcccggggaa
aagggcgtgacgtggatcaagccggaccttgtggccgagatcgaattcgctgagttgacc
catgagggttcaatccgccagggaagtttcctctcattgcgggaagacaaaccggcaagc
gacgtccatcttgatgccgtggaaaaagcatccgccaagggcaagggagttaccgttgcc
gggatcgagatcacgcatcccgagcgcgtcgtttattccgacgactcgatcaccaagctg
gaggtcgcgcgctactacgagcgggtgggggaactcatcttgccgcatttgaaggaccgg
ccgcttgcccttctgagggctcccgacgggatcggcagtgacatgttcttccaaaagagc
ttcaaggcgcatgttccgccgcacgtgaagatgagcacgctggacgatggaaccgaggtg
atctccatcaagaacttgaagggcctcatttcccttgtgcaattcggagtgatcgagatc
cacccttggggtgcgtctttagcgaagcccgacaagcctgatcagatcatctgggatctc
gatcccgacaagtcggtgccttggaaagaggtgctgggcgccgcttttctcctgcgggac
gttcttgaggcgcgcggtctccagaccttggtgaaaacttcaggcggcaagggacttcac
gtggtgctccacctcaagcgccagcactcttgggaagtcatgaaatcttttgcgaaaggg
gtggctgcctccgtcgcggaacagaatccccagcgcttcacgatcacctccagcttcaag
aagcgcggcgggaagatctacatcgactggctccgcaatggccgcggtgccacttgcatc
gcgccatgggctttgcgcgcccgaccaggggccgcggtttccatgccgctggagtgggat
caacttccgggcttggaggcccaaggtttcaccattcgtgaaccggcggaaactccggcg
agttggctgaatatcatttcccagtccgtcccgaaggcgctgctggctgagtttgcctcg
ctgtag
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