Lipotes vexillifer (Yangtze River dolphin): 103082780
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Entry
103082780 CDS
T03090
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lve
Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03013
Nucleocytoplasmic transport
lve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lve00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103082780 (UPF1)
03015 mRNA surveillance pathway
103082780 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lve03019
]
103082780 (UPF1)
Enzymes [BR:
lve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103082780 (UPF1)
5.6.2.5 RNA 5'-3' helicase
103082780 (UPF1)
Messenger RNA biogenesis [BR:
lve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103082780 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103082780 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103082780
NCBI-ProteinID:
XP_007461172
UniProt:
A0A340XM15
LinkDB
All DBs
Position
Unknown
AA seq
1110 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
CAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEI
CLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDR
MQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTV
LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVV
RLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTA
ERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGD
HCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQ
NGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLK
AGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCV
RANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLTVLVEGPLNNLRE
SLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGM
ISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLP
GPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFK
SQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcacgttcctggacaccgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcactctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgctggggccccggtc
tgcgcgggcccgggcgcggcggccggacagctcgacgcgcaggtcggtggacctgagggc
atcctgcagaacggggccgtggatgacagcgtggccaagactagccagttgttggccgag
ttgaacttcgaagaagatgaggaagatacctattacacgaaggatctccccatacatgcc
tgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaataccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcacctcgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagacggttctggag
tgttataactgcggctgccgcaacgtcttcctcctcggcttcatccctgcgaaggctgac
tcggttgtggtgctgctatgcaggcagccctgtgccagtcagagcagcctcaaggacatt
aactgggacagctcgcagtggcagcccctgatccaggaccgttgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcaccgcccagcagatc
aacaagctggaggagctctggaaggaaaatccttctgccaccttggaggacctcgagaag
ccgggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcctaccagtac
cagaacattttcggtcctctggtcaagctggaggctgactacgataagaaactgaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctgacatgcggctcatgcaaggggatgagata
tgcctgcggtacaaaggggacctggcgcccctatggaaagggatcggccacgtcatcaag
gtccctgataattatggcgatgagatcgctattgagcttcggagcagtgtgggtgcaccc
gtggaggtgactcacaacttccaggtggatttcgtgtggaagtcaacctcattcgacagg
atgcagagtgcgttgaaaacctttgctgtggacgagacctccgtgtcgggctacatctac
cacaaacttctcggccacgaagtggaggatgtgatcatcaagtgccagctgcccaagcgc
ttcacggcgcaggggctccctgacctcaaccactctcaggtttacgccgtgaagactgtg
ctgcagagaccactgagtctgatccagggcccaccgggcacaggaaagacggtgacctca
gccaccattgtctaccacctggctcggcaaggcaatgggcccgtgcttgtctgtgctcca
agcaacatagccgtggatcagctgactgagaagatccaccagactgggctgaaagtcgtg
cggctctgtgccaagagccgagaggccatcgattccccggtgtcgttcttggccctgcac
aaccagatcaggaacatggacagcatgccggagctccagaagctgcagcagctgaaggat
gagactggcgagctgtcgtctgcggacgaaaagcggtaccgggccctgaagcgcactgcc
gagcgggagctgcttatgaatgcagatgtcatctgctgcacgtgtgtgggcgccggagac
ccgaggctcgccaagatgcagttccgatccattttaatcgacgagagcacccaggccacc
gagccagagtgcatggtccctgtggtccttggagccaagcagctgatcctcgtgggcgac
cactgccagctgggccccgtggtgatgtgcaagaaggcggccaaggccgggctgtcccag
tcgctctttgagcgcctggtggtgctgggcatccgtcccatccgcctccaggtccagtat
cggatgcatcctgcgctcagtgccttcccatccaacatcttctatgagggctctcttcag
aatggtgtcaccgcagcggatcgtgtgaagaaggggtttgacttccagtggccccaaccg
gataaaccgatgttcttctatgtgacccagggccaagaggagattgccagctcaggcacc
tcctacctaaacaggacggaggctgcaaatgtggagaagatcaccacgaagctgctgaag
gcgggcgccaagccagaccagatcggcatcatcacgccctatgagggccagcgctcctac
ctggtgcagtacatgcagttcagtggctccttgcacaccaagctctaccaggaggtagag
attgccagcgtggatgcgttccagggccgcgagaaggacttcatcatcctctcctgtgtg
cgggcgaatgagcaccaaggcattggatttttaaacgaccccaggaggcttaatgtggcc
ttgaccagagcacgatatggggtcattattgtgggcaacccgaaggccctgtccaagcag
ccgctctggaaccacctgctgaccgtgctggtggaggggccgctgaacaacctgcgagag
agcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgc
ttcatgacaacagccatgtatgatgctcgggaggccatcatcccaggatcggtctatgac
cggagcagccagggccggccctcgaacatgtacttccagacccatgaccagattggcatg
atcagtgctggccccagccacgtggctgccatgaacattcccatccccttcaacctggtc
atgccgcccatgccgccaccggggtattttggacaagctaatgggccagccgcaggccgg
ggcaccccaaaaggcaagactggtcgtgggggacgccagaagaaccgctttgggcttcct
gggcccagccagacgaatctccccaatagccaggccagccaggatgtggcgtcacagccc
ttctcacagggtgctctgacccagggctacatctccatgagccagccctcccagatgagt
cagcccggcctctcccagcctgagctgtcccaggacagttaccttggagatgagtttaag
tcacagattgatgtggcgctgtcgcaagactccacgtaccagggggagcgggcgtaccag
cacggcggagtgacggggctgtcccagtattag
DBGET
integrated database retrieval system
