Yoonia vestfoldensis: LOKVESSMR4R_00485
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Entry
LOKVESSMR4R_00485 CDS
T04854
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lvs
Yoonia vestfoldensis
Brite
KEGG Orthology (KO) [BR:
lvs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvs03019
]
LOKVESSMR4R_00485
Enzymes [BR:
lvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LOKVESSMR4R_00485
Messenger RNA biogenesis [BR:
lvs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LOKVESSMR4R_00485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
ResIII
GRAB
Motif
Other DBs
NCBI-ProteinID:
ART99823
UniProt:
A0A1Y0E895
LinkDB
All DBs
Position
complement(479578..482067)
Genome browser
AA seq
829 aa
AA seq
DB search
MNAVVQTAAFCVAQPDLDRACPPRQTITMTDLPIDIILPDLVAALGQHGRAVLQAPPGAG
KTTRVPLAMLQAGLTRGKIIMLEPRRLAARAAAERLADSLGEGPGQRVGYRMRGDNQPGT
HIEVVTEGILTRMIQSDPALTGIGAVIFDEFHERSLNADLGLALAWEARSVLRPDLILLV
MSATLDAAPVAAMLDDAPIITSAGQSYPVTAHFLDTALPKTTRLPQATADLVIRALQDTN
GGVLVFLPGEGEIRATMAALSGRLPHDCVIRPLYGALPFKDQRAALAPVSAGRKIVLSTS
IAETSLTIPDIRVVVDTGRARRARFDPGSGMSRLVTERVSRAEATQRAGRAGRVAPGDAY
KLWTKGEDGALPAFAPAEIEAADLAGLALELALWGSDDLAFLTPPPAAALAEARALLQSL
GALDGHLRITAHGRALAALPLHPRLGHMLQTAGAQAAPLAALLAARDPLRGAPADLALRI
QALAGRYDGPGQVNPAALAQIKPEIARLAKGLPKAAPMTLAEQAALAYPDRIGLRRKGDA
PRYLLSGGKGAVIDSADPLAGQRLIVATDLDGDKLEARVRQASAITDAALRGLFGDRIAW
HDLCQWSRRDGKVLARKQERLGALVLDDRAWTDAPDDAMARAMLDGVRQLGLHFSAAARR
FQARVALVDGLPAMDDATLIDTLDDWLLPHLSGIRSAEDWKRFDALPALRAMLDWDEMQR
LDAAAPASFETPLGRKIPIDYDDATPAITLRLQEMFGTTRHPMVGRVPLRITLLSPGQKP
VQVTQDIVGFWATSYADVRRDMRGRYPRHPWPEDPTEADPTLRAKPRGS
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgcggtcgtgcaaacggccgcgttttgcgttgcgcaacccgaccttgaccgcgcc
tgccccccgcgtcagaccatcaccatgaccgatctgcccatcgacatcatcctgcccgat
ctggtcgcagcgcttggccagcatggccgcgccgtgctgcaagcgccacccggtgcgggc
aaaaccacccgcgtcccgctggccatgctgcaggccgggctgaccaggggcaagatcatc
atgctcgaaccccgccgccttgccgcgcgcgccgccgccgaacggctggcggattcgctg
ggcgaagggccgggccagcgtgtcggctaccggatgcgcggcgacaaccagcccggcacg
catatcgaggtcgtcaccgaaggcatcctgacccgcatgatccaatccgaccccgcgctg
accggcatcggcgcggtgatctttgacgaattccacgaaaggtccctgaacgccgatctg
gggctggcgctggcctgggaagcccgcagcgtgctgcgccccgacctgatcttgctggtg
atgtccgccacgctcgacgcggccccggtcgcggccatgctggatgacgcgccgatcatc
acctctgcggggcaatcctatcccgtcaccgcgcattttctggacaccgccctgcccaaa
accacccgcctgccgcaggccaccgccgatctggtgatccgcgcattgcaggacaccaat
ggcggcgtgctggtctttctgcccggcgaaggcgagatccgcgcgaccatggccgccctg
tccggccgcctgccccatgactgcgtgatccgcccgctttacggcgcgctgccgttcaag
gaccagcgcgcagcgctcgcccctgtcagcgcggggcgcaagatcgtgctgtccacatcc
atcgccgaaacctcgctgacgatccccgatatccgcgtcgtcgtcgatacagggcgcgca
cgccgcgcacggttcgaccccggctctggcatgtcgcggctggtcaccgaacgggtcagc
cgggccgaggcgacccaacgcgcaggccgcgcaggccgtgtcgcccccggtgacgcctat
aagctctggaccaaaggcgaggatggcgccctgcccgccttcgcccctgcggaaatagag
gccgccgatctggcaggccttgcgctggaactggccctttggggcagcgatgatctggcc
tttctgaccccgccacccgccgccgccctggccgaggcgcgcgccctgctgcaaagcctt
ggcgcgctggatggacatctgcggatcacggcacatgggcgcgcattggcggcgctgccg
ctgcatccgcgccttgggcatatgctgcaaacggcgggcgcgcaggcagcaccccttgcc
gcattgctggccgcgcgcgaccctttgcgcggtgcgcctgccgatctggcgctgcggata
caggcgctggcagggcgctatgacggaccggggcaggtcaatcccgcagcgctggcccag
atcaaacccgaaatcgcgcgccttgccaaaggcctgcccaaggcagcccccatgacgctg
gccgaacaggccgcccttgcctatcccgaccggatcgggctgcggcgcaaaggcgacgcg
ccacgctatctgttgtcgggcggcaaaggcgccgtgatcgacagcgccgatccgctggca
gggcaaaggttgatcgtggcgaccgatctggacggcgacaagctcgaagcgcgcgtcagg
caggccagcgcgatcacggatgccgcattgcgcgggcttttcggcgaccgcatcgcctgg
cacgacctctgccaatggtcgcggcgcgacggcaaagtgctggcgcgcaaacaggaacga
ttgggcgcgctggtgctggatgaccgcgcctggacggatgcgcccgatgacgcaatggcg
cgcgccatgctggacggtgtgcgccagctggggctgcatttctcagccgccgcacggcgg
tttcaggcgcgggtcgccctggtcgatgggctgcccgcgatggatgacgcaacgctgata
gacacgctcgacgactggctgctgccgcatctatccggcatacgcagcgccgaggattgg
aaacgctttgacgcgctgcccgccctgcgcgcgatgctggactgggacgagatgcagcgg
ctagacgccgccgcccccgccagctttgagacacccttggggcgcaagatcccgatcgat
tatgacgatgcgacgcccgcgatcaccctgcggctgcaagaaatgttcggcacgacgcgg
catccgatggtggggcgggtgcccttgcggatcacgctcttgtcacccggacaaaaaccg
gtgcaggtaacacaggatatcgtgggcttttgggccacatcatacgcagatgtgcggcgc
gatatgcgcgggcgttatccgcgccacccctggcccgaagacccgaccgaggccgacccc
acgctgcgcgccaaaccgcgcggcagctga
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