Legionella waltersii: SAMEA4504053_2218
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Entry
SAMEA4504053_2218 CDS
T06599
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lwa
Legionella waltersii
Pathway
lwa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lwa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA4504053_2218 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lwa03400
]
SAMEA4504053_2218 (mfd)
Enzymes [BR:
lwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA4504053_2218 (mfd)
DNA repair and recombination proteins [BR:
lwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SAMEA4504053_2218 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
DUF1474
AAA_30
AAA_22
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
SNV07589
LinkDB
All DBs
Position
1:2350211..2353651
Genome browser
AA seq
1146 aa
AA seq
DB search
MNSNALLYPTTQKKLVWGQLHGSSLALALAEYCEQTSGIKLLITQDNLSASQLQEELLFF
LEGKQEVLLFPDWETLPYDQFSPHQDIISERLYTLSRLQQSNNVIVLSSASTLMHRLPPP
DFLNQYALMLKTGQKLELDLFRNQLQQAGYHCVNKVLEHGEYAVRGSIIDVYPMGSHMPF
RIELFDDEIESLRQFDTETQRTIEKIKHVHVLPAREFPLTEQSQLLFRKSFREQFPGNPS
QCPIYEAITNGQFPSGIEYYLPLFFDKTVTLFDYLPQTSNIALIENIQLYAEQFWVELSD
RFEQRRYDISRPILPPETCFITANELLTKANSYEPIRLFHNTSEKKNAFNFNVSEGPLLP
IDRKNPEPLQLLKQYCSVPNRRYLLVVESAGRREVLLDLLKPSHIQPKTVQSWAEFLQSN
SSVNITTGALMNGCELNESHISIIVESQLFGEQSTPQRRSSQKTVDPDLIIRDMAELRVG
SPVVHLQFGVGRYQGLQYINTNDTASEFLVLTYAGDDKIYVPVTSLHMISRYTGVDSEHA
PLHRLGTDLWQKEKKKAAEKIHDVAIELLDLYAKREAQPGHQYQFEQMEYTKFASGFPFT
ETPDQLQAIEQIINDMRSSRPMDRLICGDVGFGKTEVAMRAAFVAVQNGKQVCILAPTTL
LAGQHFESFRDRFADFPVMIELLSRFRSNKESEQVIESLKSGKTDIVIGTHKLFQSNIAF
KNLGLLIIDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLNMAMAGIRDISLIATPP
AKRLAIKTFWQEKNNLTIREAILREILRGGQVFFLHNNVQTIDRVCQDLQALVPEANIRI
AHGQMRERELERIMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADMFGLAQLHQLR
GRVGRSHHQAYAYLLTPNEKSLTPDAIKRLEAIVSLEDLGAGFTLATHDLEIRGAGELLG
EEQSGNMHAIGFSLFMEMLDKAVSDLKSGKTPELSAPMQQGPEIDLKLSAVIPEDYIGDI
HNRLIMYKRIANAKSSQQLHELQVELIDRFGLLPQPVKHLLLITDLKLKAEQMGVVKISA
NAEQGRIDFSEQPFIDPTVLIQLIQVHAKRYKMEGPQRLKFSLDASTGEDRIHEIKQLLI
KLSPKQ
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcaatgcgctactttacccgacgacacaaaagaaactagtttggggtcaactc
catggtagcagcttagcacttgccttagctgaatattgcgagcagacctctgggattaag
ctactcattacgcaagacaatctcagtgctagtcaactgcaagaggagctgctctttttt
ttagaaggtaaacaagaggtgctgttattccctgattgggaaacgttgccctacgatcaa
ttttcaccgcaccaggacattatttcagaacgactttatacgttaagtcgcctgcaacaa
tccaacaacgtaattgtgctatcttccgctagcacattaatgcatcgattgcctccaccc
gattttttgaatcaatatgccctgatgctcaaaacgggacaaaagcttgagctagactta
ttccgaaatcaattacaacaagctggctatcactgtgtcaataaagttcttgaacatgga
gaatacgctgtgcgaggctcaatcatagatgtctatcctatgggtagtcacatgcccttt
cgcattgagttatttgacgatgaaatagagagtttgcgccagtttgatacagaaacgcaa
agaaccattgagaaaatcaagcatgtccatgtgcttccggcccgtgagttcccactgacc
gaacaaagccaattattatttagaaaatcgttcagagagcaatttccaggaaacccaagc
caatgtcctatctacgaagcgattaccaacggccaatttccctcaggaattgaatattat
ttacccctgttttttgataaaacagtcaccctttttgactatttgccgcaaacgagcaac
atcgctttaatcgaaaacattcaattgtacgctgaacagttttgggtagagttaagtgat
cgcttcgaacaacgacgctatgatattagtcggccaattttaccgcctgaaacctgtttc
attactgctaacgaacttcttacaaaggcaaatagctatgagcccattcgcttattccat
aacacgtcagaaaaaaagaatgcattcaatttcaatgtctctgaagggcccttacttcct
atcgaccgaaaaaaccccgaaccattgcagcttctaaagcaatactgctctgttcccaat
cgacgttatttgttggtggttgaaagtgctggaagaagagaagtgctccttgacttacta
aaacccagccatatacaacctaaaacagttcaatcatgggcggaatttctccaaagtaat
agttctgtcaacattacgactggtgccttaatgaatggctgtgaacttaatgagagccat
atatccatcattgttgaatcacaattatttggagaacaaagtacgccacaacggagaagc
tcacaaaaaacagttgatcccgatctgattattcgagatatggctgaattaagagttgga
tccccagtagtgcatcttcaatttggtgtaggacgctatcaaggacttcaatacattaat
accaacgatacagcaagcgaatttttagtcttaacttatgcaggagatgataaaatctat
gtgcccgttacctccttgcatatgataagtagatacacaggtgtagacagtgagcatgct
ccattgcatagattgggtaccgatctatggcaaaaggaaaagaaaaaagccgctgaaaaa
attcacgatgtagccattgagttgctggatctctatgccaaacgtgaagcacaaccaggc
catcagtaccaatttgagcaaatggaatacaccaaatttgccagtggctttccatttaca
gaaacacccgatcaattacaagccattgaacagatcatcaatgacatgcgatcttctcgt
cccatggataggttaatttgtggagatgttggctttggtaaaactgaagtagccatgcgc
gctgcttttgtggctgtccaaaatgggaaacaagtttgcattctagctccaactacgctt
ctagcaggacagcattttgagtcatttcgtgatcgctttgcagacttcccagtcatgata
gagttactctctcgctttcgaagcaacaaagaatcagagcaagtcattgaatcattaaaa
tctggaaaaacagacattgtcataggaacccataaactctttcagagtaatattgccttt
aaaaatctaggcttgctgattattgatgaagaacatcgatttggagttaagcagaaagag
catattaaagcattaagaactcatgttgatatcttatccatgactgccacacccattcct
agaacgctcaatatggcaatggcaggaattcgagacatctctttaattgcaactccacca
gcaaaaaggttagccataaaaaccttctggcaagaaaaaaacaacttaacgattagggaa
gcaatcctccgcgagatcctaaggggaggacaagtttttttcctgcataacaatgtgcaa
acaattgatagagtttgtcaggatttgcaggcattggtgcctgaagccaacatacggata
gctcatggacaaatgcgtgaaagagagctagagcgcatcatgtcggacttttatcaccat
cgttttaatgtgttggtttgcaccaccattattgaaacgggtattgatataccaacagcc
aataccattattatagatagagcagacatgtttggtcttgcacaattgcatcaattaaga
ggccgtgtggggcgatctcatcaccaagcatatgcttatttattaactcctaatgaaaaa
tcattaactcccgatgcaattaaacgccttgaagcaattgtctcactggaggatttaggt
gctggttttactttagcaacacatgatctggaaattcgaggtgctggtgagctgcttggt
gaagaacaaagcggtaatatgcatgccataggctttagtttatttatggaaatgcttgat
aaagctgtcagtgatctaaaatcaggaaaaacccctgaattgtctgctcctatgcagcaa
ggtccagaaattgatcttaaacttagtgctgttattccagaggattatattggagacatc
cacaatcgcttaattatgtataaacgaattgcaaacgcaaaatcaagccaacaactgcat
gagttgcaagttgaacttattgatcgcttcggcttgttgcctcaaccggttaaacacctc
ctgttaattactgacttaaaattaaaagcagagcaaatgggtgttgttaaaatcagtgct
aatgctgagcaaggccgaattgatttttcagaacaaccattcattgatccgacagtgctc
attcaactcattcaggtccatgccaaacgctacaaaatggaaggaccacagcgcctaaaa
ttctccctagatgcctctactggagaagatagaatccatgaaattaagcaattactgatt
aaactgtctcccaaacaatag
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