Leptotrichia wadei: JCM16777_2147
Help
Entry
JCM16777_2147 CDS
T06741
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lwd
Leptotrichia wadei
Pathway
lwd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lwd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JCM16777_2147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lwd03400
]
JCM16777_2147
Enzymes [BR:
lwd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JCM16777_2147
DNA repair and recombination proteins [BR:
lwd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JCM16777_2147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_30
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
BBM43864
UniProt:
A0A7U6LCM1
LinkDB
All DBs
Position
complement(2276067..2279264)
Genome browser
AA seq
1065 aa
AA seq
DB search
MNFNLSFLNKLKNKEKKILQSENNFYRGAIPWFLLCSEKKKIIYISTSNRNLENYHAMLE
NYYEMSEKQKDILMEKSKTGKKNSKENVNKLEDKKIIDIFENILQNKEDITGINIKLLDI
LKNQEKFILFVNLQITLDIFFEKVKFFSFEIGKEYSFTKIVEFLVENGYENSYLIEKKGQ
YSRRGDILDIFPPDLEHPVRLEFFGDELESIRVFDIDSQISVEKMEEIKVFGNLLSGNNY
ELIELIDELRAEDVTIVIENEELLDYKMEEFILLDRSREEIYRKRYENLKKKSIFVQTKN
FSQEQIETFRDKNRLEKLSKIEDIYIFTNNYEKKMSEYGQILTEKENNLEIEKYELFEGF
IFNDTSENPDNKNRKNNFIVLTDRELDGYIYERKKKTTKAIKYKKVNQIIEGDYVIHVQY
GVGIYKGIQTMEERDYLKIKYADEDILYIPVEKLDRLEKYVSNDTEPQLFRLGTRGFKRK
RKKLEEDIQKFAAELIKIQARRQSQNGFVYQKDTVWQEEFEANFPFEETEDQRNAINDVK
KDMESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMVAPTTVLAEQHFERFKRRF
KNYPITIENLSRLTKSKSKDILKNLKSGIIDLVIGTHRLLSDDVQFKNLGLLIIDEEQKF
GVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISIIDTPPTNRLPIITEVLDWD
EETIKMAILRELSRDGQVFYIYNDVKNMKEKLKELKEMLPDFVKIEFINGQLPPKEIKDK
LLRFENGQFDILIASTIIENGIDVGNANTILIENFTGLGLSQVYQLKGRVGRSNRQGYCY
LLKTRNITKQGRQKEESMLKVEGIKSGGFQISMEDLKIRGAGEILGDKQHGTIETFGYDL
YIKMLNEEIRKQKGEFVEKIENVEIILNERGFIPETYIQKDERLNIYKRFAMLETDGELN
DLLDEIRDRFGKIPEQMKKFILSIKLKLFAEKHKIQRILETRNHFELYFLENARAKQNEL
NEKIEMKKVVKIINSAVLTGKNKKEDIVDNFVIMKVKKNEFIKNL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaactttaatttaagttttttaaataaattaaaaaataaagaaaaaaaaattctacaa
tctgaaaataatttttaccgcggtgcaattccgtggtttttattatgttcggaaaagaaa
aagataatttatatttccacatccaatagaaatttggaaaattatcatgcaatgcttgaa
aattactatgaaatgtcagaaaaacaaaaagatattttaatggaaaaatctaaaactggt
aaaaaaaatagtaaagagaatgtaaataagctggaagataaaaaaataattgatattttt
gaaaatatcttacaaaataaggaagatataacaggaataaatataaaactgctggatatt
ttaaaaaatcaggaaaaatttattttatttgtaaatttacagattactttggatattttt
tttgaaaaagttaagtttttttcttttgagattggaaaagaatatagttttacaaaaatt
gtagaatttcttgtggaaaatgggtatgaaaattcatatttgattgaaaaaaagggacag
tacagcagacgtggggatattcttgatattttcccaccagacttggaacatcctgttaga
ctcgagttttttggtgatgaactggaaagtataagagtttttgatattgatagccagatt
tctgtggaaaagatggaagaaataaaagtttttggaaatttgctttctggaaataattat
gaattgattgagcttattgacgaattaagggcagaagacgtaacgattgttattgaaaat
gaggaattgctggactataaaatggaagagtttatcctgcttgacagaagccgtgaggaa
atttatcgaaaaagatatgaaaatctgaagaaaaaaagtatttttgtgcagactaaaaat
ttctcgcaggagcagatagagacttttagggataaaaataggcttgaaaaattgtcaaaa
attgaagatatttatatttttacgaataactatgagaagaaaatgagtgaatatgggcaa
attctgactgaaaaggaaaataatcttgaaattgaaaaatatgagctgtttgagggattt
atctttaatgatacttcagaaaatccagataataaaaataggaaaaataattttattgtg
cttacagacagggagcttgacggatatatttacgagcgaaagaaaaaaacaacaaaagct
ataaaatataaaaaagtcaatcagataatcgaaggcgactatgtaatccacgttcaatac
ggtgttggaatttataagggaattcagacaatggaagagcgggattatttgaaaatcaag
tatgctgatgaggatattttgtatattcctgtggaaaagctggacagacttgaaaaatat
gtgtcaaatgatacggaaccgcaattattcaggctaggaacacgtggatttaagcgaaaa
aggaaaaaactcgaagaagatattcagaaatttgcggcagaacttatcaaaatacaagca
cgacggcaaagccagaatggttttgtgtatcagaaggatactgtgtggcaggaggaattt
gaggcgaattttccatttgaagaaacagaagatcagagaaatgccataaatgatgtgaaa
aaggatatggaaagtccgcaaataatggacaggattgtctgtggagatgttggatatggg
aaaacggaagttgcaatgagagccgcatttaaagcaattgacaatggaaagcaggttgtt
atggtagctccgactacagtgcttgcagaacagcattttgagcggtttaaaagaagattt
aaaaattatccgattacaattgagaatttatcacggcttacgaagagtaaatcaaaggac
attttaaaaaatttgaaaagtggaattattgacttagttattggaactcacaggcttcta
agcgatgatgtgcagtttaagaacttagggcttttaattattgatgaggaacagaaattt
ggagttaaggctaaagaaaagttaaaatctcaaagggaaaagctggatgtgctgacatta
actgcgactccgattccacgtaccctaaaccttgcaatgctcggaatccgtgaaatttcc
ataattgacactcctccaacaaataggcttcctattataacagaagtactagattgggat
gaggaaacaataaaaatggcaatactacgtgaactgtcacgtgatgggcaagttttctat
atttataacgatgtaaaaaatatgaaggaaaaattgaaggaactaaaagaaatgcttcca
gactttgtaaaaattgaatttataaacggacagcttccgccaaaggaaattaaggataag
ttgttgcgttttgaaaatgggcagtttgacattctgattgcttcaacaattattgaaaat
ggaattgatgtgggaaatgccaacactattttgattgaaaactttactggtttaggctta
tcgcaggtgtatcagctgaaggggcgtgtagggcgtagcaacaggcaaggatactgttat
ttattaaaaacgagaaatattacaaagcaggggcggcaaaaggaagaaagcatgctaaaa
gtggaagggataaaatcaggaggttttcaaatttcgatggaagacttgaaaatacgtggc
gctggggaaattttgggagacaagcagcacggaacgattgaaacttttgggtatgattta
tatataaaaatgttaaatgaggaaattcgtaagcaaaagggcgagtttgttgaaaaaatt
gaaaatgtggaaatcatactaaatgaaagaggatttattccagaaacatacattcaaaaa
gacgagaggctgaatatctataaacgttttgcaatgctggaaacagacggtgaattgaat
gatttgcttgatgaaattagagataggtttgggaaaattccagagcagatgaaaaaattt
attttaagcattaaattaaaattatttgctgaaaaacataaaattcagagaattcttgaa
acaagaaatcattttgaactgtactttttggaaaatgcacgagcaaagcaaaatgaatta
aatgaaaaaattgaaatgaaaaaagtcgtgaaaattattaattcagcagttttaacagga
aaaaataaaaaagaagatattgttgataattttgttataatgaaagttaagaaaaatgaa
tttataaaaaatctgtaa
DBGET
integrated database retrieval system
