Luteimicrobium xylanilyticum: KDY119_02776
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Entry
KDY119_02776 CDS
T06254
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lxl
Luteimicrobium xylanilyticum
Pathway
lxl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lxl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KDY119_02776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lxl03400
]
KDY119_02776
Enzymes [BR:
lxl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KDY119_02776
DNA repair and recombination proteins [BR:
lxl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KDY119_02776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QFU99249
UniProt:
A0A5P9QD81
LinkDB
All DBs
Position
complement(3113452..3117141)
Genome browser
AA seq
1229 aa
AA seq
DB search
MNLTGLLPAVLADPTAASVVERARSRGELDVVASVGARPALLAAASAKRPLVVVTATGRE
GDELATAVRAYLPDEDHDAVAVLPSWETLPHERLSPRADTVARRLAVFRRLAHPSATDSN
PTDDAGAAIPGSGLASSGTSHTGPIRVLVVPVRALLQPVVEGLGELAPVELHTGDQVDLE
DVAQRLSDAAYARVDMVERRGEFAVRGGILDVFPPTEDHPLRVELWGDEVEEIRWFSVAD
QRSLEVAERGVWAPPCRELLLTPEVRARALGLQEQLPGAVDMLERIANGIAVEGMESLTP
VLVDRMVPVLSLVPDDALLVAVEPERVRRRAHDLVATTEEFLAAAWTGAAGGGNTPLDLS
AASFLTLADARDESARRGLGWWTFSSFGLGTDDLAELTDGSEDGVETLTIPARDVERYAG
DVERAVDDVRGLQHAEWRLVLTTEGHGPAQRMTEQLRASDTAARLVPSLSAAEAAEGPEP
GIVLVTVAPGVPGFVMPELRLAVFSESDLTGRAGAGTKDMRRMPSRRRNVVDPLQLRAGD
FVVHEQHGVGRFVEMVQRTLGTGANAATREYLVLEYASSKRGQPGDRLFVPMDQLDQVTK
YVGGESPSLSKMGGSDWAKTKSRARKHVKEIASELIRLYSARMATEGHAFGPDTPWQREL
EDAFAYIETPDQLSTIDEVKADMEKSVPMDRLVCGDVGYGKTEIAIRAAFKAVQDGKQVA
VLVPTTLLVQQHFETFSERYAQFPVTVRALSRFQTEKESNETIAGLADGSVDVVIGTHRL
ITGNVRFKDLGLVVIDEEQRFGVEHKETLKALRTNVDVLAMSATPIPRTLEMAVTGIREM
STLATPPEERHPVLTYVGAYDDKQITAAVRRELLREGQVFYVHNRVESIDRAAARIRELV
PEARVDVAHGKMSEGQLDRVIRAFWEKELDVLVCTTIIETGLDISNANTLILERADQLGL
SQLHQLRGRVGRGRERAYSYFLYPPERPLTETAHDRLATIAAHTDLGAGMQVAMKDLEIR
GAGNLLGGEQSGHIEGVGFDLYVRMVGEAVASFRGEGGGDGSADVAEVTVELPVDAHLPV
EYIAHERLRLEAYKKIAGAQDDAALAEIRAELVDRYGALPEVASALFDVAAFRNDARRAG
LTDVTAQGKFVRFAPVELPESATLRLKRLYPGAILKPAVRTILVPFPTTARIGGKPLHGV
EVLAWAKQLIDAVVGGDVAAAAAVGTGAR
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcaccggactcctgcccgccgtcctcgccgatccgaccgctgcgtccgtcgtc
gagcgcgcgcgctctcggggcgagctggacgtcgtggcgtccgtgggtgcccgcccggcg
ctgctggcggcggcgagcgccaagcgcccgctggtcgtggtgaccgcgaccggtcgcgag
ggcgacgagctcgcgacggcggtccgcgcctacctccccgacgaggaccatgacgcggtc
gccgtcctcccgagctgggagacgctgccgcacgagcgcctgtcgccccgcgcggacacg
gtggcccggcgcctcgcggtgttccgccgcctcgcgcacccgtcggccaccgattcgaac
ccgaccgacgacgccggcgccgcaatcccgggcagcgggctcgcgtcgtctggcacgagc
cacaccggcccgatccgggtgctggtggtcccggtccgcgccctcctccagccggtcgtg
gaggggctcggcgagctcgccccggtcgagctgcacacgggcgaccaggtcgacctcgag
gacgtcgcccagcgcctgtccgacgccgcgtacgcgcgcgtggacatggtcgagcggcgc
ggcgagttcgcggtccgcggcggcatcctcgacgtcttcccgccgaccgaggaccacccg
ctgcgcgtcgagctgtggggcgacgaggtcgaggagatccgctggttctcggtcgccgac
cagcgcagcctcgaggtcgccgagcgcggcgtgtgggcgccgccgtgccgcgagctcctc
ctcacccccgaggtccgcgcgcgggcgctcgggctgcaggagcagcttcccggcgccgtc
gacatgctcgagcggatcgccaacggcatcgccgtcgagggaatggagtcgctcaccccg
gtcctggtggaccggatggtcccggtgctgtcgctcgtgcccgacgacgcgctcctggtc
gcggtcgagcccgagcgggtgcgccgtcgtgcgcacgacctggtggcgaccaccgaggag
ttcctggccgcggcgtggacgggcgcggcgggcggcgggaacacgccgctcgacctgtcg
gcggcgtcgttcctgaccctggcggacgcccgcgacgagtcggcccgccgcgggctcggc
tggtggacgttctcgtcgttcggcctcgggaccgacgacctggcggagctcaccgacggc
tccgaggacggcgtggagaccctgacgatcccggcgcgcgacgtcgagcgctacgcgggg
gacgtggagcgcgccgtcgacgacgtccgcggcctccagcacgccgagtggcggctggtc
ctgaccacggagggccacggccccgcccagcgcatgacggagcagctccgcgcgtcggac
accgcggcccggctggtcccgtcgctgagcgcggccgaggccgccgaggggccggagccg
ggcatcgtcctcgtgacggtcgcccccggcgtcccgggcttcgtgatgcccgagctcagg
ctcgcggtcttcagcgagtcggacctcacgggccgtgccggggcgggcaccaaggacatg
cgccggatgccgagccggcggcgcaacgtcgtcgaccccctgcagctgcgcgcgggcgac
ttcgtggtgcacgagcagcacggggtcggacggttcgtcgagatggtgcagcgcacgctg
gggacgggcgcgaacgcggcgacgcgcgagtacctggtgctcgagtacgcgagctcgaag
cgcggccagccgggggaccggctgttcgtcccgatggaccagctcgaccaggtcaccaag
tacgtgggcggcgagtcgccgtcgctgtccaagatgggcggctccgactgggcgaagacc
aagagccgcgcccgcaagcacgtcaaggagatcgcgagcgagctgatccgtctgtactcg
gcgcgcatggcgacggaggggcacgcgttcggcccggacaccccgtggcagcgcgagctc
gaggacgccttcgcgtacatcgagacgcccgaccagctctccacgatcgacgaggtcaag
gccgacatggagaagtcggtccccatggaccggctggtgtgcggcgacgtcggctacggc
aagacggagatcgcgatccgggcggcgttcaaggcggtccaggacggcaagcaggtcgcg
gtcctcgtcccgacgacgctgctcgtccagcagcacttcgagaccttctccgagcggtac
gcacagttcccggtgacggtccgtgcgctgtcgcggttccagacggagaaggagtcgaac
gagacgatcgcgggcctcgcggacgggtcggtcgacgtcgtgatcggcacgcaccgcctc
atcaccggcaacgtccggttcaaggacctcgggctcgtcgtcatcgacgaggagcagcgg
ttcggcgtcgagcacaaggagacgctcaaggcgctgcgcacgaacgtcgacgtcctcgcg
atgtccgcgaccccgatcccgcgcacgctcgagatggccgtgaccggcatccgtgagatg
tcgacgctcgcgacgccgcccgaggagcggcaccccgtcctcacgtacgtgggtgcatac
gacgacaagcagatcaccgcggccgtccgccgcgagctgctgcgcgagggccaggtcttc
tacgtccacaaccgggtcgagtcgatcgaccgggcggccgcgcgcatccgcgagctcgtc
ccggaggcgagggtcgacgtcgcgcacgggaagatgagcgagggccagctcgaccgggtg
atcagggcgttctgggagaaggagctcgacgtcctcgtctgcacgacgatcatcgagacc
ggcctcgacatctccaacgccaacaccctcatcctcgagcgggccgaccagctcggcctg
tcccagctccaccagctccgcgggcgcgtcggccgcggccgtgagcgcgcgtactcgtac
ttcctgtacccgccggagcggccgctcaccgagaccgcgcacgaccgcctcgcgaccatc
gccgcgcacaccgacctcggcgccggcatgcaggtggcgatgaaggacctcgagatccgc
ggcgccggcaacctgctcggcggtgagcagtcgggccacatcgagggtgtcggcttcgac
ctgtacgtgcggatggtcggggaggccgtggcgtcgttccgcggcgagggcggcggagac
ggatcggccgacgtcgctgaggtcacggtcgagctgcccgtcgacgcacacctgcccgtc
gagtacatcgcccacgagcgcctccgcctcgaggcgtacaagaagatcgccggcgcccag
gacgacgccgcgctggccgagatccgcgccgagctcgtcgaccggtacggcgcgctgccc
gaggtcgcgtccgcgctgttcgacgtcgccgcgttccgcaacgacgcccgccgcgccggg
ctcaccgacgtcaccgcgcagggcaagttcgtgcggttcgcacccgtcgagctcccggag
tccgcgaccctgcggctcaagcgtctctacccgggcgcgatcctcaagcccgcggtgcgg
acgatcctcgtcccgttcccgacgacggcccgcatcgggggcaagccgttgcacggcgtc
gaggtgctcgcgtgggcgaagcagctcatcgacgcggtcgtcgggggcgacgtcgccgcg
gccgctgcggtgggaacgggagctcgctga
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