Leifsonia xyli subsp. xyli CTCB07: Lxx06900
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Entry
Lxx06900 CDS
T00190
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
lxx
Leifsonia xyli subsp. xyli CTCB07
Pathway
lxx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lxx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lxx06900 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lxx03021
]
Lxx06900 (rho)
03019 Messenger RNA biogenesis [BR:
lxx03019
]
Lxx06900 (rho)
Transcription machinery [BR:
lxx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Lxx06900 (rho)
Messenger RNA biogenesis [BR:
lxx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Lxx06900 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
AAA_22
ResIII
VWA_2
PIP5K
Motif
Other DBs
NCBI-ProteinID:
AAT88623
UniProt:
Q6AG72
LinkDB
All DBs
Position
690967..693105
Genome browser
AA seq
712 aa
AA seq
DB search
MLIAARMERAGGKEPSSVTDVELHAGGVDTSDLTSLKVAELQALATQLGLQGASKLRKGE
LVAAIAAARSAVEGAPAPAAAGQQEPASAASQVLIEPLIAAPVEDEPAAATLLPQTGGRR
RGSRRASSPDGTRITAATHVNTGETGVESLIPDVDALLDSALASREQAQRDGQGQNGSRR
GLGQSGQQEQNSPQTAPTAGADSAEADAPRPAGQPGDQQDAQTSGGRRRGRNRNKGAGGQ
NGEQGQNQGPQNQNQNQNHQSQPKDLQQGGEQGEKQGQQNRSGQQQAEGERSGRYRDRNR
KRRSGVAGDELEPEIDEDDVLVPVAGILDVLDNYAFVRTTGYLPGASDVYVSLGQVKKYS
LRKGDAVVGAIRQPREGENNSRQKYNALVKVDSINGQTVEEAAARVEFGKLTPLYPQERL
RLETEPTKITQRIIDLVAPIGKGQRGLIVAPPKAGKTIVMQQIANAITTNNPEVHLMIVL
VDERPEEVTDMQRTVKGEVIASTFDRLAEDHTTVAELAIERAKRLVELGHDVVVLLDSIT
RLGRAYNLTAPASGRILSGGVDASALYPPKRFFGAARNIEHGGSLTILASALVETGSKMD
EVIFEEFKGTGNMELRLSRQLADKRIFPAVDVNVSGTRREEMLMGQDEVKITWKLRRALA
GLDQQQALEMVLGRLKETSSNVEFLMQMQKSMPQPAAGHGAAHSHGHENDHC
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgctcatagcggcgcgcatggagcgcgccgggggaaaggaaccctcttcagtgactgat
gtcgaactccacgccgggggcgtggacaccagcgacctgacctcgctcaaagtggcggag
ctccaggctctcgccacccagctcggtctccaaggcgcaagcaaacttcgcaagggcgaa
ctcgtcgcggccatcgccgcggcgcggtccgcggtggagggcgcccctgcgcccgccgct
gcgggtcagcaggaacccgcgagcgcggcctctcaggtcctcatcgagccgctcatcgcc
gcgcccgtcgaggatgagcctgccgcggcgacgctgctgccgcagaccggaggacgccgc
cgcggttcgcgccgcgcgtccagccctgacggcacccgcatcaccgctgccacgcacgtc
aacacaggggagacgggcgtcgagtcgctgatcccggatgtcgatgcgctgctcgactcg
gctctcgcctcgcgcgaacaggcccagcgtgacggccagggccagaacggaagccggcgc
gggctcggccagagcggtcagcaggagcagaactccccgcagaccgcccccaccgcgggc
gccgacagcgccgaggcggacgccccgcggcctgccggacagcccggcgaccagcaggac
gctcagaccagtggcggccgtcgtcgcggccgcaaccgcaacaagggcgccggtggtcag
aacggcgagcagggccagaaccagggcccgcagaaccagaaccagaaccagaaccaccag
agtcagcccaaggaccttcagcagggcggcgagcagggcgagaagcagggccagcagaac
cgcagcggtcagcagcaggccgagggcgagcgttcgggccgctaccgcgaccgcaaccgc
aagcgccggagcggtgtcgccggggacgagctggagccggagatcgacgaggacgacgtc
ctcgtcccggtcgccggcatcctggacgtgctcgacaactacgccttcgtgcgcaccacc
ggctatttgccgggggcgagcgatgtgtacgtctcgctcggccaggtcaagaagtacagc
ctgcgcaagggcgacgccgtggtcggcgcgatccgccagccgcgcgagggcgagaacaac
agccgccagaagtacaacgcgctggtgaaggtcgactcgatcaacggccagaccgtcgag
gaggccgcggcgcgtgtcgagttcggcaagctgaccccgctctacccgcaggagcgtctg
cggctggagaccgagcccaccaagatcacccagcgcatcatcgacctcgtggccccgatc
ggcaagggtcagcgcggtctgatcgttgcgccgcccaaggcgggcaagaccatcgtgatg
cagcagatcgccaacgcgatcaccaccaacaaccccgaggttcacctcatgatcgtcttg
gtggacgagcgtcccgaagaggtcaccgacatgcagcgcacggtcaagggcgaggtcatc
gcttccaccttcgaccgtctggccgaagaccacaccaccgtcgcggagctcgcgatcgag
cgggcgaagcgcctggtcgagttgggtcacgacgtggtcgtgctgctcgactcgatcacc
cgcctggggcgcgcttacaacctgacggcaccggcctccggccgcatcctgtcgggcggt
gtcgacgcctccgcgctctacccgccgaagcgtttcttcggcgccgcgcgcaacatcgag
cacggcggctcgctcaccatcctcgcctcggcgctggtggagaccggctccaagatggac
gaggtgatcttcgaggagttcaagggcaccggcaatatggaactccgcctgtcgcgccag
ctggccgacaagcgcatcttccccgctgtggacgtcaacgtctccggcacccgccgcgaa
gagatgctgatgggccaggacgaggtcaagatcacctggaagctgcgtcgcgccctcgcc
ggcctcgaccagcagcaggctctggagatggtgctcggacgactcaaggagacgtcgagc
aacgtcgagttcctcatgcagatgcagaagtcgatgccgcagccggcagccggccacggc
gccgcccactcgcacggtcacgagaacgaccactgctag
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