Leifsonia xyli subsp. cynodontis DSM 46306: O159_19790
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Entry
O159_19790 CDS
T02852
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lxy
Leifsonia xyli subsp. cynodontis DSM 46306
Pathway
lxy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
O159_19790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lxy03400
]
O159_19790
Enzymes [BR:
lxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O159_19790
DNA repair and recombination proteins [BR:
lxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
O159_19790
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-GeneID:
17048893
NCBI-ProteinID:
AGW41988
UniProt:
U3PEH7
LinkDB
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Position
complement(1878241..1881852)
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AA seq
1203 aa
AA seq
DB search
MRLQGLISALQRASTYGDALASAARDADFSLTDGLRVPLLAGLLACRAEQGASQASLVIT
ATGRESESVRAALPCVLPGAEVVEFPAWETLPHERLSPSPEIVGKRLVALRRLSDWTAAG
SATPFVLVASVRAALQPIADNLTDYDRVELVAGARGYDLAGLVAHAVDLAYTRVDMVTRR
GEFAVRGGILDVFPPTADHPCRVEFFGDEVEQIRAFSVADQRSLPEPIASVGLPPSRELL
LSESVRQRAREMQHEFPSLSSMLARIAEGIPVEGMESLAPALADRLVPLTHYLPDGAAVA
VMSPERVASRAVSLAETNREFLSAAWSAATVGAAAPIDLAAGDFLTLQQLRDDVTFSRPG
HPTPDHPWWTFSGFQANDVLPEERELEEHLQIRVEAAAVPRFQGNVTGAVEHVAGLLKRG
WRVIIVAEGAGLVERAAQVLAEAGLPARPLEAFPADPEPGVASLIRATVEHGFELEETKL
ALLSEGEFYGRTVGYDSRQVKKLATRRKSVVDPLQLKPGDHVVHETHGIGRFVELTQREV
SSGGRNAVKSKREYLVLEYAPSKRGYPGDKLYVPTDQLDLLTRYVGGEAPQLSKMGGSDW
AAAKGRARRAVRDIAVELVKLYSARMASKGHSFAPDTPWQRELEEAFPFTETPDQLQTID
EVKADMERPIPMDRLISGDVGFGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVKQHAETFM
ERFAGFPVHLRQLSRFQTDREARETLRGLADGTVDIVIGTHRILSDGVTFKDLGLVVIDE
EQRFGVEHKDQLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFV
GPYSERQVGAAIRRELLREGQVFFVHNRVGSITSVAAKLAELVPEARIAYAHGKMNEHAL
EQVVVDFWERKFDVLVSTTIIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERA
YAYFLWDEDKPLSETAHYRLSTIAANNDLGSGMQVALKDLEIRGAGNLLGGEQSGHIAGV
GFDLYLRMIGEAVSAFRGEVVEGQTELRLELPVDARIPEEYVDSERLRLEAYQKLSAATA
PAAKDGQIDLVLEELTDRYGEPPAPVLNLVAVSRLRRIAQRAGLGEVVAMGSQLRLAPAV
LPESLQVRLQRMYPGSKYHAAPKVAMVPLPRVNGEVPEDAEAIAWVATLLGALFPAPEPA
PAA
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
gtgagactgcagggcttgatctcggcgcttcagcgcgcctccacctacggcgacgctctc
gcctccgccgcccgagacgccgacttctccctcacagatgggctccgcgtgccgctgctg
gccgggctgctcgcgtgtcgcgccgaacagggcgcttcgcaggcgtcgctcgtgatcacg
gccaccggccgcgagtccgagtcggtgcgcgcggcgctgccctgtgtgctgcccggcgca
gaggtcgtcgagttcccggcatgggagaccctgccgcacgagcgtctcagcccgagtccg
gagattgtcggcaagcgtcttgtcgccctccggcggctgagcgactggacggccgcgggc
agtgcgacgcccttcgtgctcgtcgcctcggtgcgcgccgctctccagccgatcgccgac
aacctgacggactacgaccgtgtcgagctggtggccggcgcgcgtggatacgatctcgcg
ggcctcgtcgcgcacgcggtggacctggcgtacacgcgggtcgacatggtcacccgtcgc
ggcgagtttgcggtgcgcggcggcatcctggacgtcttcccgcccacggccgaccacccc
tgccgggtcgagtttttcggcgacgaagtcgagcagatccgcgcgttctcggtggcggat
cagcggtcgctgcccgagcccatcgcctcggtcgggctgccgcccagccgcgagcttctg
ctgagcgagtccgtgcgacagcgggcgcgcgagatgcagcacgagttcccgagcctgtcg
tccatgctcgccaggatcgcggagggcatccccgtcgaggggatggagtcgctcgcgccg
gcgctggccgaccgtctcgtccccctcacccactacctcccggacggcgcggcggtcgcc
gtgatgtcgccggaacgggtcgcctcccgcgcggtgagcctcgccgagacgaaccgcgag
ttcctctccgccgcgtggagcgccgccacggtcggggcagccgcgcccatcgacctcgct
gcgggagatttcctcacgcttcagcagctgcgggacgacgtgacgttcagccggcccggt
catcccacccccgatcacccctggtggaccttctccggcttccaggcgaacgacgtgctg
cccgaggagagggagctcgaggagcacctccagatccgtgtcgaagcggcggccgttccc
cgtttccagggcaatgtcaccggcgcggtcgagcatgtggccggtttgctcaaacgcggc
tggcgtgtgatcatcgtggccgaaggcgctggcctcgtggagcgggccgcccaggtgctc
gccgaagcggggctgccggcgcggccgctggaggcgttccccgccgacccggagcccggc
gtcgcctctctgatccgcgccaccgtcgagcacggattcgaattggaggagacgaagctc
gcgctgctcagcgagggagagttctacggccgcacagtcggctacgactcccggcaggtc
aagaagctcgccacccggcgcaagagcgttgtggacccgctacagctgaagccgggcgat
catgtcgtccacgagacgcacggcatcggccgcttcgtggagctgacccagcgcgaggtc
tccagcggcggccgcaacgccgtgaagtccaagcgcgagtacctcgtgctggagtacgcc
ccgtccaaacgcggctacccgggcgacaaactctacgtgcccacggatcagctcgacctg
ctcacccgctacgtcggaggcgaggccccgcagctgtcgaagatgggcggcagcgactgg
gccgccgcgaagggccgcgcccggcgcgcggtgcgcgatatcgcggtggaactggtgaag
ctctactcggcgcgcatggccagcaaggggcattctttcgcgccggacaccccctggcag
cgggaattggaagaggcgttccccttcacagagacgcccgaccagttgcagaccatcgac
gaggtcaaagccgatatggagcggccgatcccgatggacaggctcatctcgggcgatgtc
ggcttcggcaagacggagatcgccatccgggccgcgttcaaagccgtgcaggacggcaaa
caggtggccgtgctcgtgccgaccacgctgctggtcaaacagcacgccgagacgttcatg
gagcgcttcgccggcttcccggtgcatctgcggcagctcagccggttccagacggacagg
gaggcgcgagagacgctgcgcggcctggccgacggcaccgtcgatatcgtcatcggcacg
caccgcatcctgtccgacggggtgacgttcaaggatctcgggcttgtcgtgatcgacgaa
gagcagcggttcggggtcgagcacaaggatcagctgaagaagttgaagacgaatgtcgac
atcctggcgatgagcgccacgcccattccgcgcacgctggagatggcagtgaccggcatc
cgcgagatgtccacgctcgcgacgccgccggaggacaggcacccgatcctcaccttcgtc
ggaccctactcggagaggcaggtcggtgcggcgatccgccgcgagctgctgcgggagggg
caggtgttcttcgtccacaaccgcgtcggctcgatcacgagcgtggccgccaaactcgcc
gagctggtcccggaggcgcgcatcgcctacgcgcacggcaagatgaacgagcacgccctg
gagcaggtcgtggtcgacttctgggagcgcaagttcgacgtcctcgtctcgaccaccatc
atcgagaccggcctcgacatctcgaacgccaacaccatcatcatcgaccgcgccgacaag
tacggcctcagccagctccaccagctgcgcggccgggtcggccgcgggcgggagcgcgcc
tacgcctacttcctctgggacgaggacaaaccgctcagcgaaaccgcccactatcgcctg
tccaccatcgcggccaacaacgatctcggcagcggcatgcaggtcgcgctcaaagacctg
gagatccgcggcgccggcaatctgctgggcggcgagcagtccggtcacatcgccggggtc
ggcttcgacctctacctccggatgatcggcgaagccgtttcggctttccggggcgaggtt
gtcgaggggcagaccgaattgcgtctggagctgccggtggacgctcgcattcccgaggag
tacgtcgacagcgagcggttgcgcctggaggcgtaccagaagctctcggccgcgacggcg
ccggccgcgaaggacggccagatcgacctcgtgctggaggagctgaccgaccgctacggc
gagccgcctgcgcccgtgctgaacctcgtggccgtctcgcgactgcgccgcatagcgcag
cgggcggggctcggcgaggtcgtcgcgatgggctcccagctgcggttggcccccgccgtg
ctgccggagtcgcttcaggtgcgtctccagcggatgtatcccgggtccaagtaccatgcg
gcgccgaaggtggcgatggtccctctgccccgggtgaacggggaggtgccggaggatgcc
gaggcgatcgcgtgggtggcgaccctgctgggtgcgctgttcccggcgccggagcccgca
cccgccgcctga
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