Protaetiibacter intestinalis: D7I47_09165
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Entry
D7I47_09165 CDS
T05661
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lyd
Protaetiibacter intestinalis
Pathway
lyd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D7I47_09165 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyd03400
]
D7I47_09165 (mfd)
Enzymes [BR:
lyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D7I47_09165 (mfd)
DNA repair and recombination proteins [BR:
lyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D7I47_09165 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
MFD_D3
DUF3638
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYF98412
UniProt:
A0A387B494
LinkDB
All DBs
Position
1942614..1946189
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AA seq
1191 aa
AA seq
DB search
MGLAPLIPVLSRAQSYADALAGASSDGDFSAVEGLRVPLLAGLLERRTRASGTGQALLTV
AATSREAQAVAEAFACWAPEALVLPFPAWETLPHERLSPSAETVGRRLKSLRELRRWQDG
PRERPLVLVASVRAALQPLAPGLDELEPVVLTPQGRGYDIAQLAVRLAELAYTRVDLVTR
RGEFAVRGGILDVFPPDAVHPVRADFFGDELEQLRAFSVADQRSLPGEVPPVELGPAREL
LITDAVRSRASELRHEFEGVAGMLAKIAEGIPVEGMESLTPALVGRLVPLTDYLPEDAAV
AVLSPERVATRALSLAETNREFLEAAWSAATAGAQAPIDLQASLDTGDFLTVSGLRAEAR
PRSWWTVSPFDADDEEVSRVDGRAIPSFAGQVDGAASHVAALLKGEWSVAIAAAGVGLVD
RAAQVLAEHEVAARIVDAAPAEPEAGVAYLVTGSVEAGFELDDARFALLSEAEFYGRAAG
IDSRQPKRLASRRRNVVDPLQLKPGDAVVHETHGIGRFVELVTREVTGGGRVARGPLGTK
HEKVTREYLVLEYAPSKRGQAGDRLFVPTDQLDQLSRYVGGENPALSKMGGSDWAAAKGK
ARKAVRDIAVELVKLYSARMASPGHAFGPDTPWQRELEEAFPFAETPDQLQTIDEVKADM
ERPIPMDRLISGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVKQHMETFQERFAGF
PVHLRALSRFQTEKESKATLEGLERGEVDVVIGTHRILSDAVRFKDLGLVVIDEEQRFGV
EHKDQLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPRSDK
QITAAIRRELLREGQVFFVHNRVSSINRVAAELAELVPEARIAVAHGKLTEHQLEQVIVD
FWERRFDVLVTTTIIETGIDIANANTLIIDAADKYGLSQLHQIRGRVGRGRERAYAYFLY
DAEKPLTETAQDRLETIAANNELGGGMQIALKDLEIRGAGNLLGGEQSGHIAGVGFDLYL
RMIGEAVSAFRGDVAEGQTELRLELPVDARIPEEYIESERLRLEAYQKLSTASAPLSPDD
ALDRVVEELADRYGEPPEAVQQLVAVSRLRRQAQKAGLGEVVAMGGRMRLAPLDPPDSIQ
VRLTRMYPGVKFFAAQHAVNVPMPEDASDAELIAWVGQLLTAAVPASAPVG
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
gtgggtctcgctcctttgattccggtgctgtcgcgcgcccagagctacgcggatgcgctc
gcgggggcctcctccgacggcgacttctccgccgtcgaggggctgcgggtgcccctgctg
gcggggctgctcgagcggcgcacccgggcgtcgggcacggggcaggcgctgctcacggtc
gccgcgacgagtcgcgaggcgcaggccgtcgcggaggcgttcgcgtgctgggctcccgag
gcgctcgtgctgccgttccccgcctgggagaccctgccacatgagcggctgagcccgtcc
gccgagacggtcggtcggcgcctcaagagcctgcgcgagctgcgccgctggcaggacggg
ccgcgcgagcgcccgctcgtgctcgtggcatccgtccgcgccgccctgcagccgctcgcc
cccgggctcgacgagctcgagccggtcgtgctcaccccgcaggggcgcggctacgacatc
gcgcagctcgccgtgcggctcgccgagctggcctacacgcgcgtcgacctcgtcacgcgg
cgtggggagttcgcggtgcgcggcggcatcctcgacgtcttccccccggacgccgtgcac
cccgtgcgcgccgacttcttcggcgacgagctcgagcagttgcgggcgttctcggtcgcc
gaccagcgctcgctgccgggcgaggtgccgcccgtggagctcggcccggctcgcgagctg
ctcatcacggatgccgtgcgctcgcgcgcgagcgagctgcggcacgagttcgagggcgtc
gcgggcatgctcgcgaagatcgccgagggcatccccgtggagggcatggagtcgctcacg
cccgcgctcgtcgggcgcctcgtgccgctcaccgactacctgccggaggatgccgccgtc
gcggtgctctcgcccgagcgggtggcgacccgagccctcagcctcgccgagacgaaccgc
gagttcctcgaggccgcgtggagcgccgccacggcgggcgcccaggcccccatcgacctg
caggcgagcctcgacacgggcgacttcctcaccgtctcggggctgcgcgccgaggcccgc
ccccgcagctggtggacggtcagccccttcgacgcggacgacgaggaggtctcgcgcgtc
gacggccgcgccatcccgagcttcgcggggcaggtcgacggcgccgcatcccacgtcgcg
gcgctgctgaagggcgagtggtcggtcgcgatcgcggccgcaggcgtcggcctcgtcgac
cgcgccgcccaggtgctcgccgagcacgaggtggcggcgcgcatcgtcgacgccgccccc
gcggagccggaggccggggtcgcctacctcgtcacgggttccgtggaggcgggtttcgaa
ctcgacgacgcccgcttcgccctgctctcggaggccgagttctacggccgcgccgccggc
atcgactcccgccagccgaagcggctcgcgagccgccgccgcaacgtcgtcgacccgctg
cagctgaagcccggcgacgccgtcgtgcacgagacgcacggcatcggccgcttcgtcgag
ctcgtcacgcgcgaggtcacgggcggcggccgtgtcgcccgcggaccgctcggtacgaag
cacgagaaggtcacccgcgagtacctcgtgctcgagtacgcgccctccaagcgcggccag
gccggcgaccggctcttcgttcccaccgaccagctcgaccagctttcccgctacgtcggc
ggcgagaaccccgccctcagcaagatgggcggatccgactgggcggccgcgaagggcaag
gcgcgcaaggcggtgcgcgacatcgcggtcgagctcgtcaagctctacagcgcccggatg
gcgagccccggccacgccttcggccccgacacgccctggcagcgcgagctcgaggaggcg
ttccccttcgccgagacccccgaccagctgcagaccatcgacgaggtgaaggccgacatg
gagcggcccatccccatggaccggctcatctcgggcgacgtcggctacggcaagaccgag
atcgccgtgcgcgccgcgttcaaggccgtgcaggacggcaagcaggtggcggtgctcgtg
ccgaccacgctgctcgtcaagcagcacatggagaccttccaggaacgcttcgccggcttc
cccgtgcacctgcgcgcgctcagccgcttccagaccgagaaggagtcgaaggcgacgctc
gaggggctcgagcggggcgaggtggatgtcgtgatcggtacccaccgcatcctctcggac
gccgtgcggttcaaggacctcggcctcgtcgtcatcgacgaggagcagcgcttcggcgtc
gagcacaaggaccagctcaagaagctgaagaccaacgtcgacatcctggcgatgagcgcc
acccccatcccgcgcacgctcgagatggcggtcaccggcatccgcgagatgtcgacgctc
gcgacgccgcccgaggaccggcacccgatcctcaccttcgtggggccgcgctcggacaag
cagatcaccgcggcgatccggcgcgagctgctgcgcgaggggcaggtgttcttcgtgcac
aaccgggtgtcgtcgatcaaccgggtggccgcggagctcgccgagctcgtgccggaggcg
cggatcgcggtcgcgcacggcaagctcaccgagcaccagctcgagcaggtgatcgtcgac
ttctgggagcggagattcgacgtgctcgtgacgacgacgatcatcgagaccggcatcgac
atcgcgaacgccaacacgctcatcatcgacgcggccgacaagtacggcctgtcgcagctg
caccagatccgcgggcgcgtgggccgtggccgcgagcgggcgtacgcgtacttcctctac
gacgccgagaagccgctcaccgagacggcgcaggaccggctcgagacgatcgccgccaac
aacgagctcggcggcggcatgcagatcgccctcaaggacctcgagatccgcggggcgggc
aacctgctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctgtacctg
cggatgatcggcgaggccgtctcggcgttccgcggcgacgtcgccgagggacagaccgag
ctgcggctcgaactgccggtggatgcgcgcatccccgaggagtacatcgagtcggagcgg
ctgcggctcgaggcgtaccagaagctctccacggcatccgccccgctctcgcccgacgac
gcgctcgaccgcgtcgtcgaggagctcgccgaccgctacggcgagccgcccgaggcggtg
cagcagctcgtggcggtgtcgcggctgcggcgccaggcgcagaaggcgggcctcggggag
gtcgtcgcgatgggcgggcggatgcggctcgcgccgctcgacccgcccgactcgatccag
gtgcgcctcacgcgcatgtacccgggcgtcaagttcttcgccgcccagcacgcggtgaac
gtgcccatgccggaagacgcctcggatgccgagctcatcgcgtgggtcggtcaactgctc
acggccgcggtgcccgcgtccgctcccgtcggctga
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