Lysinibacter sp. HNR: FrondiHNR_04760
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Entry
FrondiHNR_04760 CDS
T09375
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FrondiHNR_04760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyh03400
]
FrondiHNR_04760 (mfd)
Enzymes [BR:
lyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FrondiHNR_04760 (mfd)
DNA repair and recombination proteins [BR:
lyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FrondiHNR_04760 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WGD38231
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All DBs
Position
1075837..1079409
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AA seq
1190 aa
AA seq
DB search
MTLRGIIDSLLPSESFSRALTYTSEDADFSLIEAIRPPLLAGLLQRRASVKPASALFIVT
ATSRESESLRASLASLLPEATILEFPAWETLPHERLSPSTETVGKRLAALRVMSEWTPEL
GTHLIVVGAVRAALQPLADNLLSVEPLNFVVGERGYDLSETSKKLVSLAYARVDLVTRRG
EFSVRGGQLDVFSPTAEHPLRIEFFGDEVEEIRAFSVTDQRSLPLKMTEAILAPSRELLL
DEGVQQRARELRSEFPNLTTMLDKVAEGIPAEGMESLTPVLVNKLVPVTDYLPREAAIAV
VSPERVRTRAASLSETNREFLAAAWSAATSGAEAPIDLSGGDFLTLESLKDSRAGRPWWT
LSTFQHDLEDPAEAQENTENYVRITADAIPSFRGSMDGAVNYVGDLVRDGWRVLVTAAGQ
GTAARAHDVLLENEIPARLVPDLSGSPEPLAATLTAGSIEHGFVSNEARFAVITEAEFFG
RSVSYQAGQVKKLASRSKNVVDPLQLRAGDYVVHETHGIGRFIELTQREITTGSGRNVTK
TLREYLALEYAPSKRGYPADKLFVPTDQLDQLSRYVGGEAPALSKMGGSDWSAAKGRARK
AVRDIAVELVKLYSARMSSKGFAFSADTPWQRELEEAFPFVETPDQLTTINAVKRDMESP
IPMDRLVSGDVGFGKTEIAVRAAFKAVQDSKQVVMLVPTTLLVKQHFETFQDRFAGFPVR
LRALSRFQTDKEAREVVQGLADGSVDVVIGTHRLLSEGIIYKDLGLVIIDEEQRFGVEHK
DMLKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTLVGPQSDKQIA
AAIRRELLREGQIFFVHNRVSSITRTAAHLSELVPEARIAVAHGKLSEATLERVVVDFWE
RKFDVLVSTTIVETGLDIANANTIIIDRADKYGLSQLHQLRGRVGRGRERAYGYFMYDAD
RPLSETAHERLETIATNNELGSGMQVALKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMI
GEAVNTFRGEDVATLTELTLELPVAAHIPEDYVDSERLRLEAYQKFSAASSASADEDQLG
LVVEELVDRYGALPDEVETLLLVSQLRHRAAKLGLSKVVVLGPNIKIERVELPDSRQLRM
QRLYPGSRYTAATGVIQVPLPVTHGVTLTGVELVEWVSKLLEVIIPDASG
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
gtgactcttcgcggaattattgattctctcctgccttctgaaagcttttctcgagcgctt
acctacacgtcggaagacgctgatttttccctcattgaggctattcgtccacccctgttg
gccggtcttcttcagcgcagggcatcggtaaaacctgcatccgctctttttatcgtgaca
gctaccagccgtgagtccgagagtctacgtgcatcacttgcttctctcttgccagaagcc
accattctcgagttcccagcctgggaaacactcccacatgaacgtctgagccccagcaca
gaaaccgtgggtaaacggctcgctgcgctccgtgtcatgagcgagtggacaccggaatta
ggaacccacctcattgttgtgggggcggtgcgcgctgctcttcaaccactagccgataac
ctactgtctgtcgaaccgcttaattttgttgtgggcgaacgtggctacgatctctccgaa
accagtaaaaaactggtatccctggcctacgcccgggttgacctggtgacgcggcgcggt
gaattttccgtgcgcggaggacagcttgatgttttctctcccactgcagagcatccgtta
cgcattgaattttttggtgatgaggtggaggaaattcgtgcgttttcagttaccgatcag
cgaagtttacctctcaaaatgaccgaggcaattcttgctcctagccgtgagctgctcctg
gatgaaggtgtccaacagcgggcacgggagttgcggagcgagtttcctaacctgacaaca
atgctcgataaggtagctgagggtattccggccgagggcatggaaagcctcacgcccgta
cttgtgaacaagctcgttcccgtcacagactatttaccgcgggaggcagcgatagcggtt
gtttcgcccgagcgtgtgcggacacgcgcggcgagtctctctgaaaccaacagagaattt
cttgctgctgcgtggagcgctgctacctccggggcagaggctcccatagacctgtccggg
ggagacttcctcacgcttgaatcactgaaggactctcgggctggccgcccctggtggacc
ctcagtacgtttcaacacgacctggaggatccagcagaggcacaggaaaacactgaaaat
tatgtgcgcattactgcggacgcaatacctagttttcgaggcagcatggacggcgcggtg
aactatgtgggcgacctggttcgtgacgggtggcgtgtacttgtgactgcagcgggacag
ggaaccgcggcacgagctcatgacgtcctcttagaaaatgagattcctgctcgattggtg
ccggatctgagtggctccccggaaccgctcgcggctacgcttactgcgggttcaatcgaa
cacgggtttgtgagcaacgaagccagatttgcggttatcaccgaggcagagttctttggt
cgtagcgtgtcctatcaggctgggcaggttaagaagctggccagccgcagcaaaaacgtt
gttgatcctttgcagctacgagcgggagactatgtggtacacgaaacccatggcatcggg
cgttttatcgagttaacacagcgtgagattacaacgggttctgggcgaaacgtaactaaa
actctgcgtgagtatcttgcgcttgagtatgctccctcaaagcgcggctatcccgcggac
aaactttttgtaccaacggatcagcttgatcagctctcgcgttacgtcgggggagaagcg
cccgcactgagtaaaatggggggttccgattggtcagcggctaagggtcgtgcgcgtaag
gccgtgcgtgacattgcggttgaactcgtgaagctatattcggctcggatgtcgagtaaa
ggttttgctttttcggcagataccccgtggcagcgcgaattggaagaggcctttcctttt
gtagaaactcctgaccagctgaccactattaacgctgtcaagcgcgatatggagtctccc
atacccatggaccgtctggtgtcgggagacgtgggttttggtaaaacggagattgctgtt
cgcgcggcctttaaagcggtgcaggattcgaaacaggttgttatgctcgtgcccacaaca
ctgcttgtcaaacagcactttgagacttttcaggatcgctttgcaggattccccgtgcgt
ttgcgggcgctgagtcggtttcaaactgataaggaagcgcgagaggtcgtgcagggtctt
gcagacggctctgtcgatgtggtgattggtactcatcgtctgctctccgaggggatcatc
tataaggatctgggcttggtgattattgatgaggagcagcgctttggggttgagcataaa
gacatgctcaaaaaattgaaaactaatgtagatatcctggcgatgagcgcaaccccgatc
ccacgcaccctggaaatggctgttaccggtatccgtgagatgtctaccttagccacgccc
ccggaagatcgacacccgattctcacgcttgtgggtcctcaatcggataaacagatcgcg
gcagctattcgacgtgaactgttgcgggagggacagattttctttgtacacaacagggtg
tcaagcatcacgcgcacggcagctcacctttccgagcttgtgccggaggcccgtatagcg
gtggcgcacggtaagctctctgaagcaacgctggagcgggtagttgtggacttttgggag
cggaagtttgacgttctcgtgtcaaccacaatcgttgagaccgggctggacatcgctaac
gccaataccatcatcatcgatcgcgcagataagtatggtctgagtcagctgcaccagctt
cgtggtcgagtaggtcggggtcgtgagcgagcctacggctactttatgtatgatgctgat
aggccgctgagcgaaacggctcacgaacggcttgagactatagccaccaataatgagttg
ggttctggaatgcaggtggcgcttaaggatcttgagattcgtggtgccggaaatctgctg
ggtggtgagcaatcgggacatattgcgggggtcggatttgacctctatttacggatgatt
ggggaggcggttaacaccttccgcggtgaggacgtggccacactgactgagcttactctg
gagttaccggtggcagctcacattcctgaggactatgtggatagtgaacgcctgagactg
gaagcctatcaaaagttttctgccgcgagctccgcgagtgcagatgaagaccagttgggt
cttgttgttgaagagcttgttgatcgttacggtgcgttgccggacgaggtagagacactt
ctgctggtttcgcagcttcggcaccgtgcagccaagctcggattgagcaaggtggttgtg
ctcggacccaacatcaagattgagcgggtagaactccccgactcccgccagcttcgaatg
cagcgactctaccctggatcacgctacacagccgcgaccggggtgatacaggtgcccctt
cccgttacccacggtgttactctgaccggtgtcgaactggttgagtgggtgagcaaattg
cttgaggttattatcccagacgcatccggctag
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