Lysinibacillus sp. YS11: LBYS11_12515
Help
Entry
LBYS11_12515 CDS
T05299
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lys
Lysinibacillus sp. YS11
Pathway
lys03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LBYS11_12515 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lys03400
]
LBYS11_12515 (ligD)
Enzymes [BR:
lys01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LBYS11_12515 (ligD)
DNA repair and recombination proteins [BR:
lys03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LBYS11_12515 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AUS87101
LinkDB
All DBs
Position
complement(2519982..2521799)
Genome browser
AA seq
605 aa
AA seq
DB search
MKPMLLSETNDIPSGDEWLFETKYDGFRCLLVWDEEPKLISRNGRHLNHLFPEILAFCQQ
IYTSIQTFLPLTLDGELVYLRNHYKSDFAVVQKRGRMQNQDVIQEHAHSCPFHYLAFDVL
TLKGESLQNHYLKTRKEQLVKLATKFKWPSVNYENPTPIQVIHGSEEHESLWQSIKLYNG
EGIVAKKKTSKWLENIRSNHWLKIKNWRYVTVIVTQYDHSNSYFHGAVFEDNELREVVTF
KHGMTEEEHQTLVKFFQTNGLRKKELWALEPSICVDIACIDFDGSKLREPRFHAFRLEIS
PEECHWLHMQRQLYPIPDSVAITHPDKPVWPNMGITKDQYLFYLQNISPYLMPFLKDRPL
TLIRYPHGVPGESFYQKSKPEKMPNFVATAVMDDIDYIVCNNLETLLWLGNQLALEFHIP
FQTHHSSYPTEIVFDLDPPSVQDFSLAVSGALDLKNIIDYFQLQSFVKTSGGKGLQLYIP
LPANTFTYEEVRIFTEFVCRFLCEQKPNLYTIERLKKNRHEKLYLDYVQHAEGKTIIAPY
STRGNEMGLVATPLLWEEVNENLTPTLFTIPFVMERMKKMSNPFQLFREVGEQQNFQAVL
DQLKA
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgcttttatccgaaacaaacgatattcctagtggagatgaatggctattt
gaaacaaaatatgatggttttcgctgcttattagtttgggatgaggagccgaagctcatt
agcagaaatggacgacatttaaatcacttgtttcccgaaattttagctttttgtcagcaa
atatatacatccatccaaacctttttacccctaaccttggatggggagttagtttattta
cgcaatcattataaaagtgattttgccgttgttcagaagagggggagaatgcaaaatcaa
gacgtgattcaggaacatgctcattcatgtccttttcactatctagcatttgatgtttta
acccttaaaggagaatctctccaaaaccactatttaaaaacgcgtaaggagcaattggtc
aagcttgctacgaagttcaaatggccaagcgtaaactatgagaatccaacgcctatccaa
gtcatacatggtagtgaggagcatgagagcttatggcagtccatcaagctttacaatggg
gaaggcattgtagctaagaagaaaacaagtaaatggcttgaaaacatacgatcaaatcat
tggttaaagataaaaaattggcgttatgtcacagtcattgtcacacaatatgaccatagc
aatagttattttcatggtgcagtttttgaggacaatgaattacgagaagtcgttacgttt
aagcatggtatgacagaagaagagcatcaaacacttgtcaaattctttcagactaatgga
ctgcgtaaaaaggagctatgggcacttgagccttcgatttgtgttgatattgcctgtatt
gattttgatggtagtaagcttcgggaacctagatttcatgcctttcgattagagatatca
cctgaggaatgtcattggctgcacatgcaacgtcaactgtatcctatccctgattcagtt
gctatcacacatccagacaagcctgtatggccgaatatgggtattacaaaggatcaatac
ttgttctatttgcaaaatatttcgccctatttaatgccttttctaaaggatcgccctcta
acgctaatacgctatccacatggtgttccaggcgaaagtttttatcaaaaaagtaaacca
gaaaaaatgcctaattttgtggcaacagctgtgatggatgatattgattatatcgtgtgt
aataacttggaaacgttattgtggcttggaaatcagctggcattagagttccacattcca
tttcaaacacatcattcttcgtacccgacagaaatcgttttcgacttagatcctccctca
gtacaagatttttcattagccgtttcaggagcacttgatttaaagaacattattgattat
tttcagctccaatcctttgtcaaaacatcaggtggaaaaggtttacagctgtatattcct
ttacccgcaaatacatttacttatgaagaggtacgtatatttacagagtttgtttgtcgc
tttttatgtgagcaaaagccaaatttatatacaattgagcgtttaaaaaagaatcgtcat
gaaaaattatatttagattatgtacaacatgcagagggcaagactatcattgccccgtat
tccactcgtggcaatgaaatgggtttagtagcaacaccgcttctatgggaggaggtcaat
gaaaacctaacgccaacactttttacgattccctttgtcatggagcgcatgaaaaaaatg
agcaatccctttcaattatttcgtgaagtaggggagcaacaaaattttcaagcagttcta
gatcaattaaaggcatga
DBGET
integrated database retrieval system
