Lysinibacillus sp. YS11: LBYS11_16910
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Entry
LBYS11_16910 CDS
T05299
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lys
Lysinibacillus sp. YS11
Pathway
lys03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LBYS11_16910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lys03400
]
LBYS11_16910
Enzymes [BR:
lys01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LBYS11_16910
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LBYS11_16910
DNA repair and recombination proteins [BR:
lys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LBYS11_16910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
TRAF_BIRC3_bd
Zn_Tnp_IS1595
Motif
Other DBs
NCBI-ProteinID:
AUS87914
LinkDB
All DBs
Position
complement(3376412..3377284)
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AA seq
290 aa
AA seq
DB search
MPELPEVEGVVQALKPTVEGRTIQQVQLSERVHFSFSEGKQCIVKQAAPDAFESTLSQMT
ITKIERRAKYIFFHLLKDDVPYVLVSHLGMTGAWFVVNSPEEINEAKFQKHIHATFEMAD
GGYLIYSDIRRFGELRFLTKIEDHAPLTKMAPEPFDKHACDFFITKSKLPKYENKAVKEV
IMDGQVISGCGNIYATEALFAQKIHPARKMSRISEKRKRALFEEIVAVLRQSIEAGGSTI
SDYRNINGEAGSMQNRLKMYGKKVCPACETATSQMTIGGRTSVYCPNCQH
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaggtagagggtgtcgtccaggcattgaagccaacagttgaagga
cgtaccattcaacaggttcagctttctgaacgagtacatttctcttttagtgagggtaaa
caatgtattgtcaaacaagcagcgcctgatgcatttgaaagtactttgtcccagatgacc
attaccaaaattgaacgaagagcaaaatatattttctttcatttgctgaaggatgatgtt
ccatatgttcttgttagtcacttagggatgacaggtgcttggtttgttgtgaattcaccc
gaagaaatcaatgaggcgaaatttcaaaagcatatccatgcgacatttgaaatggcagat
gggggatacttgatatattcagatattcgtcgattcggtgaacttcgttttctgacaaaa
attgaagatcatgcgccattgacaaaaatggcaccagagccatttgataagcatgcatgt
gatttttttataacaaaatctaagctaccgaaatatgaaaataaagccgtaaaagaagta
attatggatgggcaagtcatttcgggctgtggcaatatttatgcaacagaggcattgttt
gctcagaaaattcaccctgcacgcaaaatgagccgcattagtgaaaagcggaagcgagca
ttatttgaggagattgttgctgtcctacgtcaaagcattgaagcgggtggttcaactatt
tctgattatcggaatattaatggggaagcagggagtatgcagaatcgattaaaaatgtat
gggaaaaaggtatgtccagcatgtgaaacggcaacaagtcaaatgacaattggagggcgt
acctctgtctattgcccaaattgtcaacattaa
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