KEGG   Lysobacter sp. TY2-98: DWG18_04700
Entry
DWG18_04700       CDS       T05586                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lyt  Lysobacter sp. TY2-98
Pathway
lyt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lyt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DWG18_04700 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lyt03400]
    DWG18_04700 (ligD)
Enzymes [BR:lyt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DWG18_04700 (ligD)
DNA repair and recombination proteins [BR:lyt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DWG18_04700 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AXK71656
UniProt: A0A345ZIT1
LinkDB
Position
975222..977975
AA seq 917 aa
MGLQEYNRKRAFSRTPEPKGEVRKRSGGPLSFVVQLHHARARHYDFRLEIDGVLRSWAVP
RGPSFRPGEKRLAVETEDHPMTYSHFEGLIPEGEYGAGHMAIFDHGTWTPDGDLHAALRK
GRIDFELEGERLKGRWSLIRTRQSGKRAQWMLLKRSDEYAADLEADDLIGALPPPPADAP
GASTRSGLEIRARKGFDTERAMSKTRTASTRRASTKTVKPVRKTATARATTKATADLRAI
KRTAARLAGGAKFPLGEFVEPMLTVSSDNAPGGDDWLHEWKWDGYRLIGQSGRSPMLWSR
NGIPWNTRAPELLKMLKDFGTTAVFDGELIAVDTSGYSDFNALQKALSDKDPRAMRYVIF
DLLAVDGHDLRGVPLVERKALLEQLLTGADPHLFYSSHIVGNGPEIFDAARGRGMEGIIS
KRVNSRYFDGRSSDWLKVKTVETREFVVVGYTPPQGSRKGLGALMLGQYRDRTLVYAGRV
GSGMNSDVLLDLTKRLRALEVAEPVVEIPKHVPLPKGRIHWVKPKTVVEVFFRGWGGEGL
VRQASFHRLRDDKPATPEALAQPETVHMSTGTSKSPVRSKRAGATKTAGAALAAAKTATR
TASTTKSSARNTAKKTTAAKKSTRRTSLQIDLDTSDLPTLSSADRVVYPDASYTKQDVWN
YYLKAAPQLLDEIGGRLLSIVRCPDGIKGQHFFQKHVKHGFSDAVKSYTLVENDGDEAEY
FYVDSVAGLMSLVQMNALELHPWGSRIDAIEKPDRMVFDLDPDPSIEWPQIRAAAREVRD
RLLDVGIESFPKLSGGKGVHVVAPLQPDAEWEAVRRFCEAFADAMERQSPDRYIATMSKA
KRKGRIFIDWLRNGRGATSVASWSLRARPGAPVAVPVTWAELARAKSPSRYTLADAAKRT
MPDEAAEIIARAKPLPV
NT seq 2754 nt   +upstreamnt  +downstreamnt
atgggcctgcaggaatacaaccgcaagcgcgcgttctcgcgcacgcccgagccgaagggc
gaggtgcgcaagcgcagcggcgggccgttgtcgttcgtcgtgcagctgcaccatgcgcgg
gcgcggcactacgacttccgtctggaaatcgacggcgttctgcgcagctgggcggtaccg
cgcggtccgtcgttccggcccggcgagaagcgcctggccgtcgaaaccgaagatcacccg
atgacctattcgcacttcgaggggctgattcccgaaggcgaatacggcgccggccacatg
gcgattttcgaccacggcacgtggacacccgacggcgacctgcacgccgccttgcgcaag
gggcgcatcgacttcgaactggagggcgagcgcctgaaggggcggtggtcgctgatccgc
acgcgtcagagcggcaaacgcgcgcagtggatgctgctcaaacgcagcgacgagtacgcg
gcggacctcgaagcggacgacctcatcggtgcattgccgccgccgccagcggacgcaccg
ggtgcgtcgacgcgtagcggtctcgagattcgcgcccgaaagggcttcgatacggaacgt
gccatgtccaagacccgcaccgcttcgacgcgccgagcgagcacgaagacggtcaaaccc
gtgcgcaagacggcgacggcccgcgcgacaaccaaggcgaccgccgacctgcgcgccatc
aagcggaccgctgcgcgcctggccggcggcgccaagttcccgctgggcgagttcgtcgag
ccgatgctgacagtgtcgtccgacaacgcacccggtggcgacgactggttgcacgaatgg
aagtgggacggctaccgcctgatcgggcagagcggccggtcgccgatgctgtggtcgcgc
aatggcattccgtggaacacgcgcgcgcccgagcttttgaagatgctcaaggacttcggc
acgacggcggtattcgatggcgagctgatcgcagtcgacacgtcgggctacagcgacttc
aacgcattgcagaaggcgctgtccgacaaggatccgcgtgccatgcgctatgtgatcttc
gatcttctcgcggtcgacggccacgatctgcgcggcgtgccgctggtcgaacgcaaggcg
ctgctcgagcaactgctcacgggtgccgacccgcacctcttctacagctcgcacatcgtc
ggcaacggcccggagatcttcgacgcggcgcgcggtcgcggcatggaaggcatcatcagc
aaacgcgtcaactcccggtatttcgacgggcgttccagcgactggctcaaggtgaagacc
gtcgagacgcgcgagttcgtggtggtcggctacacgccgccgcagggctcgcgcaagggc
ctcggtgcgctgatgctggggcagtatcgggaccgcacgctcgtgtacgccggtcgtgtc
ggctcgggcatgaacagcgacgtgctactggatctcaccaagcgcctgcgcgcgctggaa
gtcgccgaacccgtcgtcgagattccgaaacacgtgccgttgcccaagggacgcatccac
tgggtgaagccgaagacagtggtcgaagtgttcttccgcggctggggcggcgaggggctg
gtgcgccaggcgtcgttccaccgcttgcgcgatgacaagccggcgacgccggaggcgttg
gcacaaccggagaccgtacacatgtcgacgggtacgtcgaaatcgcccgtccgttccaag
cgcgcgggcgcgacgaagaccgcgggcgcggcgctggcggcagcgaagacggcgacgcgg
acggcctccactacgaaatcgtccgcccgaaacacggcgaagaagacgacagccgcgaag
aagtcgacgcgtcggacatcgctgcagatcgatctcgatacgtccgacctgccgaccctg
agcagcgctgatcgcgtggtctaccccgatgccagttacaccaagcaggacgtctggaac
tactacctgaaggccgcaccgcagctgctcgacgagatcggcgggcgactcctctcgatc
gtgcgctgcccggatggcatcaagggccaacacttcttccagaagcacgtgaagcacggc
ttcagcgacgccgtgaagtcgtacacgctggtggagaacgatggcgacgaagccgagtac
ttctacgtcgacagcgtggccgggctgatgtcgctggtgcagatgaatgcgctggagctg
catccctggggctcgcgcatcgatgcgatcgagaagcccgatcgcatggtgttcgacctt
gatccggacccttccatcgaatggcctcagatccgcgcggccgcgagagaggtgcgtgac
cgcctgctcgacgtcggcatcgaatcgtttcccaagctgtcgggagggaagggcgtgcat
gtggtggcgcccctgcagcccgatgccgagtgggaagccgtgcgtcgcttctgcgaagcg
ttcgcggatgcgatggagcgtcaatcgccggatcgctacatcgcgaccatgagcaaggca
aagcgcaagggccgcatcttcatcgactggctgcgcaacggccgtggcgcgacgagcgta
gcgagctggtcactgcgtgcgcggcccggtgcgcccgtcgcggtgccggtgacatgggcg
gaactcgcgcgcgcgaagagcccgtcgcgctacacgctcgcagatgcggctaagcggacc
atgccggacgaggcggccgagatcatcgcgcgcgccaagccgttgcccgtgtag

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