Lysobacter sp. TY2-98: DWG18_04700
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Entry
DWG18_04700 CDS
T05586
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lyt
Lysobacter sp. TY2-98
Pathway
lyt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lyt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DWG18_04700 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyt03400
]
DWG18_04700 (ligD)
Enzymes [BR:
lyt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DWG18_04700 (ligD)
DNA repair and recombination proteins [BR:
lyt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DWG18_04700 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AXK71656
UniProt:
A0A345ZIT1
LinkDB
All DBs
Position
975222..977975
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AA seq
917 aa
AA seq
DB search
MGLQEYNRKRAFSRTPEPKGEVRKRSGGPLSFVVQLHHARARHYDFRLEIDGVLRSWAVP
RGPSFRPGEKRLAVETEDHPMTYSHFEGLIPEGEYGAGHMAIFDHGTWTPDGDLHAALRK
GRIDFELEGERLKGRWSLIRTRQSGKRAQWMLLKRSDEYAADLEADDLIGALPPPPADAP
GASTRSGLEIRARKGFDTERAMSKTRTASTRRASTKTVKPVRKTATARATTKATADLRAI
KRTAARLAGGAKFPLGEFVEPMLTVSSDNAPGGDDWLHEWKWDGYRLIGQSGRSPMLWSR
NGIPWNTRAPELLKMLKDFGTTAVFDGELIAVDTSGYSDFNALQKALSDKDPRAMRYVIF
DLLAVDGHDLRGVPLVERKALLEQLLTGADPHLFYSSHIVGNGPEIFDAARGRGMEGIIS
KRVNSRYFDGRSSDWLKVKTVETREFVVVGYTPPQGSRKGLGALMLGQYRDRTLVYAGRV
GSGMNSDVLLDLTKRLRALEVAEPVVEIPKHVPLPKGRIHWVKPKTVVEVFFRGWGGEGL
VRQASFHRLRDDKPATPEALAQPETVHMSTGTSKSPVRSKRAGATKTAGAALAAAKTATR
TASTTKSSARNTAKKTTAAKKSTRRTSLQIDLDTSDLPTLSSADRVVYPDASYTKQDVWN
YYLKAAPQLLDEIGGRLLSIVRCPDGIKGQHFFQKHVKHGFSDAVKSYTLVENDGDEAEY
FYVDSVAGLMSLVQMNALELHPWGSRIDAIEKPDRMVFDLDPDPSIEWPQIRAAAREVRD
RLLDVGIESFPKLSGGKGVHVVAPLQPDAEWEAVRRFCEAFADAMERQSPDRYIATMSKA
KRKGRIFIDWLRNGRGATSVASWSLRARPGAPVAVPVTWAELARAKSPSRYTLADAAKRT
MPDEAAEIIARAKPLPV
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgcaggaatacaaccgcaagcgcgcgttctcgcgcacgcccgagccgaagggc
gaggtgcgcaagcgcagcggcgggccgttgtcgttcgtcgtgcagctgcaccatgcgcgg
gcgcggcactacgacttccgtctggaaatcgacggcgttctgcgcagctgggcggtaccg
cgcggtccgtcgttccggcccggcgagaagcgcctggccgtcgaaaccgaagatcacccg
atgacctattcgcacttcgaggggctgattcccgaaggcgaatacggcgccggccacatg
gcgattttcgaccacggcacgtggacacccgacggcgacctgcacgccgccttgcgcaag
gggcgcatcgacttcgaactggagggcgagcgcctgaaggggcggtggtcgctgatccgc
acgcgtcagagcggcaaacgcgcgcagtggatgctgctcaaacgcagcgacgagtacgcg
gcggacctcgaagcggacgacctcatcggtgcattgccgccgccgccagcggacgcaccg
ggtgcgtcgacgcgtagcggtctcgagattcgcgcccgaaagggcttcgatacggaacgt
gccatgtccaagacccgcaccgcttcgacgcgccgagcgagcacgaagacggtcaaaccc
gtgcgcaagacggcgacggcccgcgcgacaaccaaggcgaccgccgacctgcgcgccatc
aagcggaccgctgcgcgcctggccggcggcgccaagttcccgctgggcgagttcgtcgag
ccgatgctgacagtgtcgtccgacaacgcacccggtggcgacgactggttgcacgaatgg
aagtgggacggctaccgcctgatcgggcagagcggccggtcgccgatgctgtggtcgcgc
aatggcattccgtggaacacgcgcgcgcccgagcttttgaagatgctcaaggacttcggc
acgacggcggtattcgatggcgagctgatcgcagtcgacacgtcgggctacagcgacttc
aacgcattgcagaaggcgctgtccgacaaggatccgcgtgccatgcgctatgtgatcttc
gatcttctcgcggtcgacggccacgatctgcgcggcgtgccgctggtcgaacgcaaggcg
ctgctcgagcaactgctcacgggtgccgacccgcacctcttctacagctcgcacatcgtc
ggcaacggcccggagatcttcgacgcggcgcgcggtcgcggcatggaaggcatcatcagc
aaacgcgtcaactcccggtatttcgacgggcgttccagcgactggctcaaggtgaagacc
gtcgagacgcgcgagttcgtggtggtcggctacacgccgccgcagggctcgcgcaagggc
ctcggtgcgctgatgctggggcagtatcgggaccgcacgctcgtgtacgccggtcgtgtc
ggctcgggcatgaacagcgacgtgctactggatctcaccaagcgcctgcgcgcgctggaa
gtcgccgaacccgtcgtcgagattccgaaacacgtgccgttgcccaagggacgcatccac
tgggtgaagccgaagacagtggtcgaagtgttcttccgcggctggggcggcgaggggctg
gtgcgccaggcgtcgttccaccgcttgcgcgatgacaagccggcgacgccggaggcgttg
gcacaaccggagaccgtacacatgtcgacgggtacgtcgaaatcgcccgtccgttccaag
cgcgcgggcgcgacgaagaccgcgggcgcggcgctggcggcagcgaagacggcgacgcgg
acggcctccactacgaaatcgtccgcccgaaacacggcgaagaagacgacagccgcgaag
aagtcgacgcgtcggacatcgctgcagatcgatctcgatacgtccgacctgccgaccctg
agcagcgctgatcgcgtggtctaccccgatgccagttacaccaagcaggacgtctggaac
tactacctgaaggccgcaccgcagctgctcgacgagatcggcgggcgactcctctcgatc
gtgcgctgcccggatggcatcaagggccaacacttcttccagaagcacgtgaagcacggc
ttcagcgacgccgtgaagtcgtacacgctggtggagaacgatggcgacgaagccgagtac
ttctacgtcgacagcgtggccgggctgatgtcgctggtgcagatgaatgcgctggagctg
catccctggggctcgcgcatcgatgcgatcgagaagcccgatcgcatggtgttcgacctt
gatccggacccttccatcgaatggcctcagatccgcgcggccgcgagagaggtgcgtgac
cgcctgctcgacgtcggcatcgaatcgtttcccaagctgtcgggagggaagggcgtgcat
gtggtggcgcccctgcagcccgatgccgagtgggaagccgtgcgtcgcttctgcgaagcg
ttcgcggatgcgatggagcgtcaatcgccggatcgctacatcgcgaccatgagcaaggca
aagcgcaagggccgcatcttcatcgactggctgcgcaacggccgtggcgcgacgagcgta
gcgagctggtcactgcgtgcgcggcccggtgcgcccgtcgcggtgccggtgacatgggcg
gaactcgcgcgcgcgaagagcccgtcgcgctacacgctcgcagatgcggctaagcggacc
atgccggacgaggcggccgagatcatcgcgcgcgccaagccgttgcccgtgtag
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