Lysinibacillus sp. 2017: DCE79_08695
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Entry
DCE79_08695 CDS
T05455
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lyz
Lysinibacillus sp. 2017
Pathway
lyz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lyz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DCE79_08695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyz03400
]
DCE79_08695
Enzymes [BR:
lyz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DCE79_08695
DNA repair and recombination proteins [BR:
lyz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DCE79_08695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AWE07445
UniProt:
A0A2S1H1C2
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Position
1805266..1807104
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AA seq
612 aa
AA seq
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MKPMLLTDSSEVPAGNGWLYETKYDGFRCILTWEKGEKTPILKSRNDNLLDQKFPEIIRF
CEGIYNDIEPYLPLVLDGELVYLTNDFQGNFSIVQKRGRMQNSQNIESHAESFPCHYIVF
DILKIKGLTKTDSHLVTRKQVLTELFGALSLPKGVNYKDSKRLQAIDVFEDSALLWQKIK
TYNGEGIIAKKRTSQWLDGTRSKNWLKIKNWKYVDVILIRLDLSNGFFDAVVYKGDVQIE
VVTFKHGLKEEEKKTLIKMFEQYGTLRNDGVWEIPASICVSVACIDFDGSKLREPKFHAF
KFNVKPSECNWQQMQRQLNPIPECVFVTHPDKPVFPTIGIKKDDYLLYLQIVAPYMLPFL
QKRRLTVIRYPHGAPGENFYQKNYQDNIPSFVTTHMADDNNYVLCNNLETLLWLGNQLAI
EFHIPFQPIQTDKPTEIVFDLDPPSVEAFHLAVSAALNLKTILDHFGLQSFVKTSGGKGM
QVYIPLPFNTFTYEETGVFTEFVCKFLVQQYPDWFTTERFKKNRGNRLYLDYVQHKEGKT
IVAPYSARGNAKGLIATPLHWDEVNEQLSPDKFTIPKVIDRINNFGDLLRNFREVGENQD
FKSVLNQISGVS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaccgatgttattgacggattcatctgaagttccagctgggaatggatggttatac
gaaacaaagtatgatggttttcgttgtattttaacttgggaaaagggtgaaaaaacacct
attctgaaaagccgaaatgataatttacttgaccaaaagtttcccgaaataattcgattt
tgtgaaggtatctacaatgacatagaaccctatttaccactagtgttggatggggaattg
gtttatttaacaaatgattttcaagggaacttttcaatcgtgcagaagcgggggagaatg
cagaatagccaaaacatagaatctcatgctgaatcttttccgtgccattatattgttttt
gatattttaaaaattaaaggtttgacaaaaactgatagccatttggttacccgtaagcaa
gtattaactgaactttttggagcactaagccttccaaaaggtgtgaattacaaggattca
aaacgattacaagccatcgatgtttttgaagatagcgcgttactctggcaaaaaataaaa
acttacaacggtgagggtataattgcaaagaagcgcacaagtcaatggctggatggtacg
aggtcaaaaaattggttgaagataaaaaattggaaatacgttgatgtgattttaataaga
ttggatctatccaatggattttttgatgcagtagtttataaaggtgacgtacaaatagag
gtagtaacgtttaaacatggcttaaaagaagaagaaaagaaaacgctcattaagatgttt
gaacaatatggcactttaagaaatgatggagtgtgggaaattcctgcttcaatatgcgta
tcggtagcctgtattgattttgatggaagtaagttaagagaaccaaaatttcatgcgttc
aagtttaacgttaaacctagcgaatgcaactggcaacaaatgcaacggcaattaaatcca
atacctgaatgtgtttttgttacacatcctgataaacctgtctttccaactatcgggatt
aagaaagatgattatttattgtaccttcaaatagtagctccttatatgttgccgttttta
cagaagcggcgattaaccgttattcggtatccacatggtgcaccaggtgaaaatttttac
caaaaaaattaccaagacaatattccaagctttgtgactactcatatggctgatgataac
aactacgtattatgtaataaccttgaaacactgttgtggctaggaaatcaacttgcgata
gaatttcacattccgtttcaaccaattcaaacagacaaaccgactgaaatcgtgtttgac
ttagatcctccatctgttgaagcgtttcatttagccgtgagtgctgcgttaaatttaaaa
accattttagatcattttgggcttcaatcattcgttaaaacatcaggcggaaaagggatg
caggtttatattccattaccatttaatacatttacttatgaagaaacaggtgtttttacg
gagtttgtatgtaaatttttagttcagcagtatcccgattggtttacaactgaacggttc
aagaagaatagagggaacagattgtatttggattatgtacaacataaagaaggtaaaacg
attgttgcaccatattcagcaaggggaaatgcaaaagggttaatagccactccattacac
tgggatgaagttaacgaacaactaagtccggataagtttaccatcccgaaagtaatagat
agaattaataattttggtgacctgttaagaaacttcagagaggtcggagaaaaccaggat
tttaaatctgttcttaatcaaataagtggtgtaagttaa
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