Mycobacteroides abscessus subsp. bolletii 50594: MASS_1028
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Entry
MASS_1028 CDS
T02682
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mabb
Mycobacteroides abscessus subsp. bolletii 50594
Pathway
mabb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mabb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MASS_1028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mabb03400
]
MASS_1028
Enzymes [BR:
mabb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MASS_1028
DNA repair and recombination proteins [BR:
mabb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MASS_1028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGM27630
UniProt:
R4UNI2
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All DBs
Position
1069564..1071915
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AA seq
783 aa
AA seq
DB search
MERISPVWPTGAAESARSGRGATAFVRLSNAEKVLYPATDTSSATTKADVFGYYTAIAPF
MLPHIAGRPVTRKRWPNGVDQPSFFEKDLASSAPDWLPRRRIEHKSRYVSYPLIDTSVAL
AWIAQQAALEVHVPQWRFAGENPGPATRLVFDLDPGEGVGMAQLAEVARAIRDVLADIGL
KTFPVTSGSKGLHLYVPLAQPASSSGAVAVAKKVAVQLEQAMPDLVTATMTRQLRAGKVF
VDWSQNSGSKTTVAPYSLRGRAVPTVAAPRTWEELDDPGLRQLRYDEVLTRAQRDGDLLA
GLDDVEIAEDRLSTYRSMRDPARTPEPVPAIKPEAGQNNSFVIQEHHATALHYDFRLERD
GVLVSWAVPKNLPLEPSVNHLAVHTEDHPLEYGSFEGTIPKGEYGAGEVTIWDSGTYDTE
KFIDPRDDSGADGGQKGEVIVTLHGKRITGRYALIRTSGKQWLAHRMKDQRPAGSMPIGL
APMLPTTGSVAGLTAEEWAFEGKWDGYRLILECDRGQLRALARSGRDVTAEFPALQRLAH
ELSDHRVVLDGEVVVPDQKGLPSFALLQNRTPGADIRFWAFDLLYLDGKSLLRTKYRDRR
RLLEVLVTGAESMTVPRQLSGDGAAALAYSQDQGWEGVVAKRLDSPYVPGRTQSWIKAKN
WRSQEVVIGGWRKGQGGRSSGIGALLMGIPVEGGLRYAGRVGTGFTEKELSSLKERLEPL
HRAESPFDAPLSTVEAKDVQFVEPVLVAEVRYGDRTPGGILKHSSWRGLRTDKSVRDVEL
DLG
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggaacgcatatccccagtatggcccaccggagccgcggagtcggcgagatccggccgg
ggggcaaccgcgttcgtccggctgtccaacgccgagaaagtgctgtacccggccacggat
accagctcggccaccaccaaagcggatgtcttcggctactacaccgcgatcgcccccttc
atgttgccgcatatcgcgggccggccggtcacccgcaagcggtggcccaacggcgttgac
cagccgtcgttcttcgagaaggacctggcttcttcggcgcccgactggctgccgaggcgc
cgtatcgagcacaagtcccgctacgtcagctacccgctgatcgacacctcggtcgccttg
gcgtggatcgcgcagcaggcggcgctcgaggtgcacgtgccacagtggcgattcgccggt
gaaaatccaggtccggcaacccggttggtgttcgacctggatcctggcgagggggtcggc
atggcccaactggcggaagtggccagggccatccgggatgtgctcgccgatatcggcctg
aagacctttccggtgaccagtggaagcaagggcttgcacctgtacgtgccgctggcgcaa
ccagccagctcgtccggtgcggtcgctgtggcgaagaaggttgccgtccagttggagcag
gcgatgcccgacttggtgacggcgacgatgacccgacagctacgcgcgggcaaggtcttc
gtggattggagccagaacagcggttccaagacgacggtggcgccctactcattacgtggc
cgggcggtgccgaccgtcgccgcgccgcgcacgtgggaagaactggacgaccccggcctg
cgtcagctgcgatacgacgaagtgctgacgcgggcccagcgtgacggcgacctgctggcc
gggctcgatgatgtcgagatcgccgaggacaggctgtccacctatcgcagcatgcgcgat
cccgcacgcacgcctgaaccggtaccggcaatcaaacccgaagctgggcaaaataattca
tttgtcatccaggagcatcacgccaccgcgctgcactacgacttccggctggagcgcgat
ggcgtgctggtgtcgtgggcggtgcccaagaacctgcccttggaaccgtcggtcaatcat
cttgcggtgcacaccgaggatcatccgctggagtacggctccttcgaaggcaccatcccg
aagggagagtatggggcgggcgaggtgacgatctgggactcgggcacttacgacaccgag
aagttcatcgacccgcgcgacgattcaggagccgacggcgggcaaaaaggtgaggtcatc
gtcaccctccatggcaagcgaatcaccgggcggtacgcgctgattcgaactagcggcaag
cagtggctggcgcaccggatgaaggatcagcggcccgcaggttcgatgcccatcggtctc
gcgccgatgttgccgaccaccgggtcggtggcgggtctgaccgccgaagaatgggcgttc
gaaggcaaatgggacggctatcggctgatcctggaatgcgatcgcggacagctcagggca
ttggcgcgcagcgggcgcgacgtcacggccgaattcccggcgttgcaacggcttgcgcat
gaactgtccgatcaccgagtggtgctcgacggcgaggtggtggtgccggatcagaagggc
ctgcccagctttgcgctgctgcagaacaggacaccgggcgccgacatcaggttctgggct
ttcgatctgctgtatctggacggaaaatcgttgttgcgtaccaagtatcgggaccgacgt
cgactgcttgaggtgcttgttaccggcgccgaatcgatgacagtgccgcggcagttgagc
ggcgacggtgccgcggcccttgcgtactcgcaggatcaaggctgggagggcgtggtggcc
aagaggctggattccccctacgttcccggccgaacacagtcttggatcaaggcgaagaac
tggaggagtcaagaggtcgtcatcggcggctggcgcaaggggcagggcggtcgcagcagc
ggaataggggccctgctcatgggaatacctgtcgagggtggtctgcgctatgcgggccgg
gtcggtaccggattcaccgagaaggaactgtcatcgctgaaggagcgtctggagcccctg
caccgcgccgaatcgccctttgatgcgccgctgtccaccgtcgaggccaaggacgtgcag
ttcgtcgagccggtgttggtggccgaagtccgatacggcgaccgcaccccgggcggaatt
ctgaagcactcaagttggcgcgggctgcgcaccgacaagtcagttcgcgacgtcgagctc
gatctcgggtag
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