Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300: MMASJCM_1167
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Entry
MMASJCM_1167 CDS
T03694
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mabl
Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300
Pathway
mabl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mabl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MMASJCM_1167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mabl03400
]
MMASJCM_1167
Enzymes [BR:
mabl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MMASJCM_1167
DNA repair and recombination proteins [BR:
mabl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MMASJCM_1167
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
BAP95943
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All DBs
Position
1168962..1172612
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AA seq
1216 aa
AA seq
DB search
MTATTPPLAGVIRTALRDPAFDVLAPAIAAKTGLDLTAPTCARAFVVTGMADASDAPVLV
VTATTREAQDLTAELRDVYGDAVTLLPSWETLPHERLSPGVDTVGARLHVLHRLAHPEDS
RMGVPLRVVITTVRSLLQPMSPELFDLEPVELAVGAELEFDGVIARLVELAYTRVDMVAG
RGEFAVRGGILDVFSPTADHPVRVEFWGDEVSEMRYFSVADQRSIPELEVASVLAMPCRE
LLLTDQVRARAAELASAAGVSGSEGGHRLGAGVGEMLAKLADGICVDGMESLLPVLHSGK
LTMLVDHLPDHAPVLVCDPEKVRTRAADLERTGREFLEASWSVAAIGSDAPIDVEALADS
GFRELDDVKHAAGEAGYPWWSLSPLGMDNDQAVGLAVRPSPSARGHKEGAAEIFAMLRAQ
VMTGGRAAVVAAGAGTTHRIIEQLAETETPATLLEPGAEPAEGVVGVLRGHLTDGVVLTG
ANIVIVTETDLTGSRVAATDGKRLPAKRRNQVDPLALSAGDLVVHDQHGIGRFVEMVERT
VGGARREYLVLEYASGKRGAAAGGQSDRLYVPMDSLDQLSRYVGGESPGLSRLGGSDWTN
TKTKARKAVREIAGELVALYAARQAAPGHAFAPDTPWQREMEDAFGFVETVDQLTAITEV
KSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR
TAGFPVKVAGLSRFTDPLTSKLVVEGMADGSVDIVIGTHRLLQTGVRWKDLGLVIVDEEQ
RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
HDDKQVAAALRRELLRDGQAFYVHNRVSTIDKAAARIRDLVPEARVVVAHGQMPEEMLER
TVQGFWNREYDILVCTTIIETGLDISNANTLIVERADIFGLSQLHQLRGRVGRSRERGYA
YFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGF
DLYVRLVGEAVEAYRAAADGKTVQTAEEPKEVRIDLPVDAHLPTDYIGSDRLRLEAYRRL
AAAADAAQINAAVEELTDRYGPLPLPVQRLVAVASLRLLCREMGITDLSVVGTNIRIQPL
PLLDSAQLRLKRLHPAAQYRATTSVVQVPIPRAGDGGVGSDRIRDLELVHMIAELLVALS
GRPAGGVDITPLEVSK
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgactaccccgcctctcgccggggtgatccggacagccttgcgggatcccgca
ttcgatgttcttgctccggctatcgccgccaagaccggcctcgatctgaccgccccgaca
tgtgcacgcgcatttgtcgtgacgggtatggccgatgcgagcgatgcgcccgtcttggtt
gtgacggccaccacccgcgaggcgcaagacctcaccgccgagctacgcgacgtgtacggc
gacgcggtgacgctgctgccgtcctgggagacgctcccgcatgagcgattgtcacccggc
gtggacacggtgggcgcgcggctgcacgtgctgcaccggttggcccatccggaggattcg
cggatgggggtaccgctgcgtgtggtgatcaccaccgtgcgctcgctgctacagccgatg
tctcccgagctgttcgatctggaaccggtggagctggccgtcggggccgagctggagttc
gacggggtgatcgcgcgtttggtcgagctcgcgtacacgcgggtggacatggtggccggc
cgcggtgagttcgcggtgcgcggcggcattctcgacgtgttcagtcccactgccgaccat
ccggtgcgcgtcgagttctggggcgacgaggtcagcgagatgcgctacttctccgtcgcc
gaccagcgttcgatcccggagctggaggtcgcctccgtgctcgctatgccctgtcgcgaa
ctgctcctcaccgaccaggtgcgggcccgggctgccgagctggcctccgccgccggagtt
tccggcagcgaggggggacaccggctcggcgccggggtgggggagatgctcgccaaactg
gcagacggaatctgtgtcgacgggatggaatcgcttctgcccgtgctgcattcgggtaag
ctcaccatgctggtcgaccatctgccagaccatgcgccagttctggtgtgtgaccccgag
aaggttcggacgcgcgcggcggacctggaacgcaccggccgggagttcctggaggcgtcg
tggtcggttgccgctatcggttctgatgcgccgatcgatgttgaagcactggcagattcg
ggattccgcgaactcgatgacgtcaagcacgcggccggtgaggccggatatccgtggtgg
tcgctgagcccgttgggcatggacaacgatcaggcggtcgggctggcggtgcggccgtcg
ccctccgcgcgtggccacaaggagggtgcggcggagatcttcgcgatgctgcgtgcccag
gtgatgaccggcgggcgggcagcggtggtcgccgccggagccggaaccacacatcggatc
atcgaacagttggcggaaaccgaaactcccgcaacgctgttagagccgggtgcggaaccc
gccgagggcgtggtcggggtgctgcgcggtcacctcaccgacggtgtcgtgctcaccggg
gcgaacatcgtcatcgtcaccgagacggatctgaccggtagccgggtcgcggccaccgac
ggtaagcggctaccggccaagcgccgcaatcaggttgatccgctggcgctttccgccggt
gacctggtggtgcacgatcagcacggcatcgggcgattcgtggagatggtggaacgcacg
gtcggtggagcccgccgggagtacctggtgctggagtatgcctcgggcaagcgtggtgcc
gcggccggtgggcagagcgaccgcctgtacgtgccgatggattccctggatcagctgtcc
cggtatgtgggtggtgaatcgcccggcctgagtcggctgggcggtagcgactggaccaac
acgaagaccaaggcgcgcaaggcggttcgtgagatcgcgggcgaactcgtggcactgtat
gcggcgcgccaggctgcgcccgggcatgccttcgctccggacaccccatggcagcgcgag
atggaagacgcgttcggattcgtcgagaccgtcgatcagctgaccgccatcaccgaagtg
aaatcggatatggaaaaaccggttccgatggatcgcgtggtgtgcggcgatgtgggttac
ggcaagaccgaaatcgcggtgcgtgcggcgttcaaggccgtccaggacggtaagcaggtg
gcggtgctggtgcccaccacactgctcgccgaccagcatctgcagacgttcaccaatcgc
accgccggctttccggtgaaggtggcgggcctgtcgcggttcaccgatccgttgacctcg
aagctggtcgtcgagggaatggccgatggttcggtcgacatcgtcatcggcacgcaccgg
ctactgcagaccggtgtgcggtggaaggacctcggcctggtgattgtcgacgaggaacag
cggttcggcgtggagcacaaggagcacatcaaggcgctgcgcacccatgtggacgtgctc
accatgagcgcgaccccgattccgcgcaccctggagatgagcctggccggtatccgcgag
atgtcgaccatcttgaccccgcccgaggagcgttatccggtgctcacctatgtgggcccg
cacgacgacaagcaggtggcggcggcgctgcgccgcgaattgctgcgcgatggccaggcg
ttctacgtgcataaccgggtgagcaccatcgacaaggccgccgcgcgcatacgcgacctc
gttccggaggccagagttgttgtcgcacacggccagatgccggaagagatgttggagcgc
accgtccagggattctggaaccgggaatacgacatcctggtgtgcaccaccatcatcgag
accgggctggacatctccaacgccaacaccctgatcgtggagcgggccgacatcttcggt
ctgtcccagctacaccagttgcgtggtcgtgtcggccgcagccgcgaacgcgggtacgcc
tatttcttgtattcacccgaggtgccgctcaccgagaccgcttacgacaggctttccacg
atcgcgcagaacaacgacctgggcgcgggcatggcggtggccatgaaagacctggaaatc
cgtggcgccggcaatgtgctcggtgtcgagcaatccggacacgtcgccggggtgggtttc
gatctgtacgtgcgtctcgtcggcgaggccgtcgaggcgtatcgcgctgccgccgacggg
aagacggtacagaccgccgaggagcccaaggaggtgcgcatcgatcttccggttgacgcg
catctgcccaccgactacatcggcagcgatcggctgcggctcgaggcataccgccggctg
gcggctgccgcggacgccgcacagatcaatgccgcggtcgaggagctcaccgaccgctac
ggaccactgccgctgcccgtgcagcgactggtcgcggtcgcttcgctgcgtttactgtgc
cgcgagatgggaatcaccgatctttccgtggtcggtaccaatattcggatacagccgttg
ccacttcttgattcggcgcagctgaggctgaagcgtttgcatccggccgcgcaatatcgc
gcgacgacttccgttgtgcaggtgcccatcccacgtgccggcgacggcggtgtgggttcg
gaccggattcgggatctggagcttgtgcacatgatcgccgagctgttggtcgcgttgtcc
gggcgcccggcgggcggtgttgatataacaccactggaggtgagcaaatga
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