Marinobacter adhaerens: HP15_2257
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Entry
HP15_2257 CDS
T01922
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mad
Marinobacter adhaerens
Pathway
mad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HP15_2257 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mad03400
]
HP15_2257 (mfd)
Enzymes [BR:
mad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HP15_2257 (mfd)
DNA repair and recombination proteins [BR:
mad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HP15_2257 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
SecA_DEAD
PBP_like_2
RecG_dom3_C
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
ADP98021
UniProt:
E4PFV1
LinkDB
All DBs
Position
2376426..2379959
Genome browser
AA seq
1177 aa
AA seq
DB search
MSQGASTRPSPLPLIAPEFPSRPADHRTWGQLHGSSEALAICESARAHKGLTLVITRSTA
DAIRLEQAMRFFLGLPPEEDGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLH
RLPATSHGVLVVPARTLMHRLPPVNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENV
YEHGEYAVRGAILDIFPMGASQPFRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFE
FPWHKEARSGFRSRWFEQFPDADKDTPIYQDVTHGITPPGIEYYLPLFFDETATLFDYLP
GATHVFTADGLNDAVSHFDSETRNRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRV
TVSAETKDAAGSVNCPTTTLPDIAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREAL
MENLGEQGVELKTLSGWQAFLDDKESSVAITIAPMEQGLVLPEHSVALITETALFGERVL
QRRRREKPTETDDAGFRDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAG
GSKLYVPVSSLHLISRYAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARR
EARKGFSFEDPKEAYRAFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKT
EVAMRAAFLATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKA
LEAVENGRADIVIGTHKLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLT
ATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFL
HNDVATIEKTAEDLRSLIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGI
DVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISE
AQDLGAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNAD
LPLSHGTEMNLRIPALIPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPD
PAKNLIRQTELRLRAEALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEG
ANSFRFRLKDATTGGKLDGISRMLGELEPAKNDASGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggtgccagcacacgcccgtcacccctccccctgattgcgcccgaatttccg
tctcggccggccgatcaccgaacatggggtcaactgcacggcagcagtgaggcgctggcc
atctgcgaaagtgcgcgcgcgcacaagggtctgaccctggtcattacccgcagcaccgcc
gatgccatccggcttgagcaggccatgcgcttcttcctggggctacccccggaagaagac
ggcccggcggtcagcgacgatgggctggaactgctgtcgctgcccgactgggaaaccctg
ccctacgatctgttttcgccccaccaggacattatttcccggcgaatccggaccctgcac
cgcctgcccgcaaccagccacggggttctggtggttcctgcacgtacgctgatgcacagg
ctgccgccagtaaattacctccagggcaacaccctgcttctggaagtgggacagtccctg
gatatcgagagctggcgaatgcagcttgaggcggcaggctaccggcatgccgagaacgtc
tacgagcatggcgaatacgcggtccggggggccatactagacattttccccatgggcgcc
agccagcccttccggattgacctgttcgatgatgagatcgaaacgctccggactttcgac
cccgagactcagcgctcaatcgaccggatcgaacgcatcgaactgctgcccgcctttgaa
ttcccctggcacaaagaggcgcgctccggattccgcagccgctggttcgagcagttcccg
gatgccgacaaagacacccccatctatcaggacgtgactcacggcattaccccgccgggc
attgagtactacctgccgctgttcttcgacgagacggcaaccctgtttgactatctgcca
ggcgccactcacgtttttactgcggacggactgaacgatgcggtcagccactttgacagt
gaaacccgcaaccggtacgaagatcgtcgtcacgatcgcctgcggccgattctgccgccc
aagcgcctcttcctgcagcaggaagagctgttcggacaactgaaggccttcccgagggta
accgtctccgcggagacaaaggatgccgcgggatcggttaactgccccacgacaaccttg
ccggatatcgccatggacggtcgagccgcagaccctgccggtcgcctcaagcggtttctg
ggagagttcgacggccacgtgctgatatgcgccgaatcgtccggtcggcgcgaggcgctg
atggagaatcttggcgaacagggtgttgaattgaaaaccctgtccggctggcaggctttt
cttgacgataaggaaagctccgtggccatcaccattgctccgatggagcaaggcctggtg
ctgcccgagcattccgttgccctgatcaccgagaccgccctgttcggcgaacgggtactg
cagcggcggcgccgcgagaagcctacggaaacggacgatgccggcttccgggatctgtcg
gaattgcggattggtgcgccggtggttcatatcgaccacggtgttggccgttatctgggt
ctggagaccatcaccgtagagggcgaagcgagcgaattcctgatgcttgggtacgccggg
ggctcaaagctgtacgttccggtctccagcctgcacctgatttcccgctatgcaggcaat
gacaccgaacacgcgccgctgcacaaactcgggacggaccgctggagcacagcgaaacag
aaagcccttgagaagatccgggatactgccgccgagctgctggatgtgtacgcccgccgg
gaggcgcgcaaaggcttcagcttcgaggatcccaaggaagcctatcgtgcctttgctgcc
ggctttccgttcgaggagacaccagaccagcaggttgctatccagtcggtgttcgaggac
atgaccagcgagcagcccatggatcgcctggtgtgtggcgatgtcggtttcgggaaaacc
gaagttgccatgcgcgcggcgttcctggctacttggtcgggcaaacaggtggcggttctg
gtccccactaccctcctcgcccagcagcattatgaatccttccgggaccgtttctcggat
acccctgtgcaggtcgagctgctcagccggttccgcacggctggccagaccagcaaggcg
ttggaggcggtggagaacggccgggccgacatcgtcatcggcacccacaaactgctacag
ggcgacatcaaattcaagaatcttggcctggttatcatcgacgaagagcatcgctttggc
gttcagcagaaggaaagactgaaagcactgcgggccgaagtggacatgctcaacctgacc
gccaccccgattccgcggacgctgaacatggccatgggccatctgcgggatctctcgatt
atcgccactcctccggcccggcggctctcggtgaaaacttttgtgcgccagaaagacaac
gccatggtcaaggaagccatactgcgggagattctccggggcggtcaggtctacttcctc
cacaacgacgtggccaccatcgagaagacggcagaggatttacgttcgctgattccggaa
gcgcgggtgggcgtcgcccacgggcagatgagagagcgtgatctggaaaagatcatgtcc
gacttctaccacaaacgcttcaacgtgctggtgtgcacaacgatcattgaaaccggcatc
gacgttcccagcgccaacaccattattatcgagcgggcagacaagttcggcctggcgcaa
ttacatcagcttcggggccgggtcggccgttcgcaccaccaggcctacgcctacctgctc
acgccaccgccgaaatccatcacggcggacgccaaaaagcgtctggatgcgatttcggag
gcgcaggacctgggtgccggcttcatgctggccactcacgacctcgaaatccgcggtgcc
ggggagttattgggggaagaacagagcgggcagatcgaaagtatcggctttaccctttac
atgcagcttctggacgaggccgtcaaggccattcgcgagggccgaaccccgaacgccgac
ctgccccttagccacggcaccgaaatgaacctgagaatcccggctcttatccccgaggat
tatctgccggatgtccataaccgcctgatgctctacaaacggattgccagcgtggacagc
ccggaagcattaaaagaacttcaggttgaaatgatcgatcggttcggattgttaccggat
ccggccaaaaacctgatccgccagaccgagcttcgattgcgtgcagaagccctgggcatc
gtgaaagtcgatgccggcaaggagtgggcgcggctcgagtttggcagctcgacaccggtg
gatccgctggttctggttaaaaaagtgcaatccgcacctgaccagtaccggctcgaaggt
gccaacagcttccgttttcggctgaaggatgccacaaccggtggtaaactcgacggcatt
tcccggatgcttggcgagctggagccagcaaaaaatgacgcgtccggctcatga
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