Mycobacterium adipatum: A7U43_08555
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Entry
A7U43_08555 CDS
T09402
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
madi
Mycobacterium adipatum
Pathway
madi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
madi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A7U43_08555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
madi03400
]
A7U43_08555
Enzymes [BR:
madi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A7U43_08555
DNA repair and recombination proteins [BR:
madi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A7U43_08555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANE79368
UniProt:
A0A172UK11
LinkDB
All DBs
Position
1786789..1789077
Genome browser
AA seq
762 aa
AA seq
DB search
MVERFGRVGLTNPDKVLYPAAGTTKAEVFDYYLAVAEAMLPHIAGRPVTRKRWPNGVEQA
EFFEKQLASSAPDWLDRGSVTHRSGTTTYPIVNTAEGLAWIAQQASLEVHVPQWRFDPAG
DPGPATRIVFDLDPGEDVSFRQLCEVAHEVKSYVEDIGLTAYPLTSGSKGVHLYVPLAEP
ISSQGASVLAKRIALALEKSMPRQVTATMTKSLRVGKVFVDWSQNSAAKTTIAPYSMRGR
AQPTVAAPRTWEEMTDPDLRQLRFDEVLERVERDGDLLAGLDDPLPKPDKLTTYRSMRDA
GKTPEPVPRTAPATGNDNTFVIQEHHARRLHYDFRLERNGVLVSWAVPKNLPETTSVNHL
AVHTEDHPLEYATFEGSIPKGEYGGGEVIVWDSGTYEAEKFRDNPPDGPDKGGEVIVTLH
GSKITGRYALIQTDGKNWLAHRMKEQPGATAADLKPMLTTHGSVEKLTAAGWAFEGKWDG
YRLLVEADHGNLHLYSRSGRDMTADFPQVRSLAADLADHQVILDGEIVALDAAGVPSFSA
MQNRATGGNIEFWAFDLLALDGRSLLRAKYRDRRALLEMLARDGSLIVPDLLDGDGAEAL
AYVRERGYEGVVAKKWDSTYQPGRRSKSWIKDKLWLTQEVVIGGWRAGEGGRTSGIGALV
VGVPEGDRLIFAGRVGTGFTEKMLGDLRTLLKPLETDESPFSTALSGPDAKGVTYVRPEL
VGEVRYSERTPEGRLRQPSWRGLRPDKSPGEVVWEPPQVAGP
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtggtggagcgcttcggccgggtcggattgaccaatcccgacaaggtgctctacccggcc
gccggcaccaccaaggccgaggtgttcgactactacctggccgtcgccgaggccatgctg
ccgcatatcgccggccgcccggtgacccgcaagcgctggcccaacggtgtcgagcaggcc
gagttcttcgaaaagcagttggcctcctcggcgccggactggctggaccgcggctcggtc
acgcaccggtcggggaccaccacctatcccatcgtcaacaccgcggaggggctggcctgg
atcgcgcagcaggcctccctggaggtgcacgtcccgcagtggcggttcgacccggcaggc
gatcccggcccggccacccgcatcgtgttcgatctggaccccggcgaggacgtcagtttc
cgccaactctgcgaggtcgcccatgaggtgaagagctacgtcgaagacatcgggctgacg
gcgtacccgctgaccagcggcagcaagggggtgcatctgtacgtgccgctggcggagccg
atcagctcgcagggcgcctccgtgctggcgaagcggatcgcgctcgcactggagaagagc
atgccccggcaggtcaccgcgaccatgaccaagagcctgcgggtcggcaaggtgttcgtg
gactggagccagaacagcgcggccaagaccaccatcgcgccctactcgatgcgtggtcgc
gcgcagcccacggtcgccgcgccgcggacctgggaggagatgacggatccggatctgcgg
cagctgcgtttcgacgaggtactggagcgggtcgagcgggacggcgacctgctggccggc
ctcgatgacccgctcccgaagcccgacaagctcaccacctaccgcagcatgcgtgacgcg
ggtaagacccccgagccggttccgcgcacggccccggcgaccggcaatgacaacacgttc
gtcatccaggaacaccacgcgcgtcggctgcactacgacttccggctggaacgcaacggc
gtgctggtgtcctgggcggtgccgaagaacctgcccgagacgacatcggtgaatcacctt
gccgtgcacaccgaggaccacccgctggagtacgccaccttcgaggggtcgatccccaag
ggcgagtacggcggtggcgaggtgatcgtctgggactcgggcacctatgaggcggagaag
ttccgggacaacccacccgacgggcccgacaagggcggcgaggtcatcgtgacgctgcac
ggctcgaagatcacgggtcgctacgcgctgatccagaccgatggcaagaactggctggcg
caccggatgaaggagcagcccggggcgaccgccgccgacctcaagccgatgctgacgacg
cacggctcggtcgagaagctgaccgccgccgggtgggcgttcgaaggcaagtgggatggg
taccggctgctcgtggaggccgaccacgggaatctgcacctgtattcgcgcagcggccgc
gatatgaccgccgattttccgcaggtgcgttccctggcagctgatctcgccgaccaccag
gtgatcctggatggcgagatcgtcgcgttggacgccgccggggtgccgagcttttctgct
atgcagaaccgcgccacgggcgggaacatcgagttctgggcgttcgatctgcttgcgctg
gacgggcgttcgttgttacgggccaagtaccgcgaccgccgagctctgctggaaatgctg
gccagggacgggagtctgatcgttccggacctgctcgacggtgacggggcggaggcgctg
gcgtatgtacgcgagcgcgggtacgagggcgtggtcgccaagaagtgggattccacctac
cagcccggccggcgctcgaagtcctggatcaaggacaagctctggctgacccaggaagtg
gtgatcggtgggtggcgtgccggcgagggaggtcgcaccagcgggatcggtgcgctggtg
gtgggtgtccccgagggcgaccgtctgatattcgcggggcgcgtcgggaccgggttcacc
gagaaaatgctgggcgacctgcggacgctgctcaagccgctggagaccgatgaatcacct
ttttccacagcgctttccggtccggatgccaagggcgtgacctatgtgcgcccggagctg
gtgggggaggtgcgctacagcgagcgcacccccgagggtcggttacggcaaccgagttgg
cgggggctgcgcccggacaagtccccgggtgaggtggtgtgggaaccacctcaggtggct
ggtccctag
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