Paramagnetospirillum magneticum: amb3139
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Entry
amb3139 CDS
T00305
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit/160 kD subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mag
Paramagnetospirillum magneticum
Pathway
mag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
amb3139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mag03021
]
amb3139
03400 DNA repair and recombination proteins [BR:
mag03400
]
amb3139
Enzymes [BR:
mag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
amb3139
Transcription machinery [BR:
mag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
amb3139
DNA repair and recombination proteins [BR:
mag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
amb3139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAE51943
UniProt:
Q2W2I2
LinkDB
All DBs
Position
complement(3385003..3389493)
Genome browser
AA seq
1496 aa
AA seq
DB search
MNELMKIFGQVSGTQSFDQIRISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLCDMTLKDLERILYFENYVVVEPGLTPLKIRELLTEEQYMRAVDEYGEDAFTAK
IGAEAIRDMLTVIDLETEKAQLKVDLKETTSEAKRKKLVKRMKLVEAFMESGSRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRML
QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFVYSKLELYGMATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYITMERDEVPGQVLKIRSMDELKGAIAN
NAILFYCPTDPNTKIDTKDLDTLLDRLASRNVTAHRRVNPSSKDALEAGLKGGHLRLFNV
EKPGVPLVFADVNDAEKAIKDGKAILFKVPVFVNMAEIEEALTEKTITLHTKIRARFDTV
DSEGTPVTQIVDTTPGRMMLSVILPKNKNVPFSLINRLLTKKEIQNVIDVVYRHCGQKET
VIFADRVMGLGYSNAFKAGISFGKDDLVIPPEKETLVGETEEKAKEYEQQYQDGLITQGE
KYNKVVDAWSKCTDDVADAMMKQISSLVPGKQINSIYMMAHSGARGSAAQMKQLAGMRGL
MAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQD
AIICEEDCGTTNGLTVSPVIEGGEVIASLAERILGRSAARDIVNPLTGEVIVKAAQMIQE
TEVELIDAAGIETVVIRSVLTCDSEEGVCGSCYGRDLARGTRVNVGEAVGVIAAQSIGEP
GTQLTMRTFHIGGAAQRGAEQSSIEATFDGTVQVINRNVVVNSSGASIVMSRNCEVALLD
INNRERARHRVPYGAKLLVDEAQKVTKGTKLAEWDPYTLPIITERAGVAHYVDLTEGLSM
REVVDEATGIASKVVVDWKQQPRGADLRPRVTLRDEKGEELLLANGLEARYFMSVDAILS
VENNTKVNAGDVLARIPRESSKTRDITGGLPRVAELFEARKPKDHAIISDCDGRVEFGKD
YKSKRRILVVPEEGDAIEYLIPKGKHISVQEGDYVRRGDPLMDGNPVPHDILKVLGVEAL
AQYLINEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDPGDTTLLVGEQVDRVEFDIEN
SKAIREQGRPASGTPVLQGITKASLQTHSFISAASFQETTRVLTEAAVSGKVDSLQGLKE
NVIVGRLIPAGTGAVMNRLRAIAAKRDKDMQVEGESEVPAIPPVAEGSAPEAPPAE
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacttatgaagatcttcggccaggtgagcggcactcagtcgttcgaccagatc
cgcatctccatcgcctcgccggagcgtatccgctcctggtcgtacggtgagatcaagaag
ccggagaccatcaactaccgcaccttcaagccggagcgcgacggcctgttctgcgcccgc
atcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtat
cgcggcatcatctgcgagaagtgcggtgtggaagtcaccctggccaaggtccggcgcgag
cgcatgggccatatcgagctggcctctcccgtggcccacatctggttcctgaagtcgctg
cccagccgtatcggcctgctgtgcgacatgaccctgaaggatctggagcgcattctctac
ttcgagaattacgtggtggtcgagcccggcctcacgccgctcaagatccgtgagctgctg
accgaagagcagtacatgcgcgccgtggacgagtacggcgaggacgccttcaccgccaag
atcggcgccgaggccatccgcgacatgctgacggttatcgatctggagaccgagaaggcc
cagttgaaggtcgacctcaaggagaccacctccgaggccaagcgcaagaagctggtcaag
cgcatgaagctggtcgaggctttcatggaatccggctcgcgcccggaatggatgatcctg
gaagtgattccggtgattccgccggaactgcgtcccctggtgcccctggacggcggccgt
ttcgccacctcggacctcaacgacctgtaccgccgcgtcatcaaccgcaacaatcgtctg
aagcggctgatcgaattgcgcgcccccgagatcatcgtgcgcaacgagaagcgcatgctg
caggaggcggtcgacgccctgttcgacaacggccgtcgcggccgcgccatcaccggcgcc
aacaagcggccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgt
cagaacctgctgggcaagcgcgtcgactattccggccgttcggtcatcgtggtcggtcca
gagctgaagctgcaccagtgcggtctgcccaagaagatggcgctggagctgttcaagccc
ttcgtctactcgaagctcgaactctacggcatggccaccaccatcaaggccgccaagcgc
atggtggaaaaggagcgtcccgaggtgtgggacatcctggaagaggtcatccgcgagcat
cccgtgatgctgaaccgcgcgccgacgctgcaccgtctgggcatccaggccttcgagccg
gtgctgatcgagggcaaggccatccagctgcatccgctggtctgcaccgccttcaacgcc
gactttgacggcgatcagatggccgtgcacgtcccgctgagcctcgaggcccagctggaa
gcccgcgtgctgatgatgtccaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgtgccgtcgcaagatatcgtgctgggcatctactacatcaccatggaacgggacgag
gttcccggccaggtgctgaagatccgctccatggacgagctgaagggcgccatcgccaac
aacgcgatcctgttctactgcccgaccgatcccaacaccaagatcgacaccaaggatctg
gataccctgctggaccgtctggccagccgcaacgtcaccgcccaccgccgcgtcaacccg
tcgtccaaggacgcactggaagccggcctgaagggcggccatctgcgcctgttcaatgtg
gaaaagcccggcgtcccgctggtcttcgccgacgtcaacgacgccgagaaggccatcaag
gacggcaaggccatcctgttcaaggtgccggtcttcgtgaacatggccgagatcgaggaa
gcgctgaccgaaaagacgatcacgctccacaccaagatccgtgcccgcttcgacaccgtg
gattccgaaggcaccccggtgacccagatcgtggacaccacgccgggccgcatgatgctc
tcggtgatcctgcccaagaacaagaacgtcccgttctccttgatcaaccgtctgttgacc
aagaaggaaatccaaaacgtcatcgacgtggtctaccgccattgcggccagaaagagacg
gtgatcttcgccgaccgcgtcatgggcctgggctattccaacgccttcaaggcgggcatt
tccttcggcaaggacgacctggtcatcccgccggaaaaggaaaccctggtgggcgagacc
gaagagaaggccaaggaatacgagcagcagtaccaggacggcctgatcacccagggtgaa
aagtacaacaaggtcgtcgacgcctggtccaagtgcaccgacgacgtcgccgacgccatg
atgaagcagatctccagcctggttccgggcaagcagatcaactccatctacatgatggcc
cattccggcgcccgtggttccgccgcccagatgaagcagctggccggcatgcgcggcctg
atggccaagccctcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaaggc
ctcaccgtgctggagtacttcaactccacccacggcgcccgtaagggtctggccgatacc
gcgctgaagaccgccaactcgggttacctgacccgtcgtctggtggacgtggcccaggac
gccatcatctgcgaagaggattgcggcaccaccaacggcctgaccgtctctccggtgatc
gagggcggcgaggtcatcgcttcgctggccgagcgtatcctcggccgttcggcggcgcgt
gacatcgtcaatccgctgaccggcgaagtgatcgtcaaggcggcccagatgatccaggag
accgaggtcgagctgatcgacgccgccggcatcgagaccgtggtgatccgttcggtgctg
acctgcgactcggaagagggcgtctgcggctcgtgctacggccgtgatctggcccgcggc
acccgcgtcaacgtcggtgaagcggtcggcgtcatcgccgcccaatccatcggcgagccg
ggtacccagctgaccatgcgtaccttccacatcggtggcgcggcgcagcgcggtgccgag
cagtcctccatcgaggcgactttcgatggcaccgtccaggtgatcaaccgcaacgtggtg
gtcaactcgtcgggcgcttccatcgtcatgagccgtaattgcgaagtggccctgctcgac
atcaacaaccgcgagcgtgcccgtcaccgcgtcccctacggcgccaagctgctggtggac
gaggcccagaaggtcaccaagggcaccaagctggccgaatgggacccctacaccctgccg
atcatcaccgagcgcgcgggtgtggcccattacgtcgacctgaccgaaggcctgtccatg
cgcgaggtggtcgacgaggccaccggcatcgccagcaaggtggtggtcgattggaagcag
cagccccgtggcgccgatctccgtccccgcgtcaccctgcgtgacgagaagggcgaggag
ttgttgctcgccaacggtctggaggcccgctacttcatgagcgtggacgccatcctgtcg
gtggagaacaacaccaaggtcaacgccggcgacgtgctggcgcgcattccgcgtgaatcg
tccaagacccgcgacatcaccggcggtctgccgcgtgtggccgagctgttcgaggcgcgt
aaacccaaggatcacgccatcatctccgattgcgacggccgcgtggaattcggcaaggac
tacaagtccaagcgccgtattctggtggtcccggaagagggcgatgccatcgagtacctg
atccccaagggcaagcacatctcggtgcaggaaggcgattacgtccgccgcggcgacccg
ctgatggacggtaatcccgtgccgcatgacatcctgaaggtcttgggcgtcgaagccctg
gcccagtatctcatcaacgagattcaggaggtctatcgactgcagggcgtgaagatcaac
gacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgatccg
ggcgacaccacacttctggtgggcgagcaggtggaccgcgtcgagttcgatatcgagaac
tcgaaggccattcgcgagcagggccgtccggcctcgggcactccggtgctgcagggcatc
accaaggccagcttgcagactcattccttcatctcggcggcctccttccaggagaccacc
cgcgtgcttaccgaggcggctgtgtccggcaaggtggactcgctccagggcctgaaggaa
aacgtcatcgtcggccgtctgatccccgccggtaccggcgcggtgatgaaccgtctgcgc
gccattgccgccaagcgcgacaaggacatgcaggtggaaggcgaatccgaggttcctgcc
attccgccggtggccgagggctcggcgccggaggctccgcccgccgagtaa
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integrated database retrieval system
