Paramagnetospirillum magneticum: amb3140
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Entry
amb3140 CDS
T00305
Name
(GenBank) DNA-directed RNA polymerase, beta subunit/140 kD subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mag
Paramagnetospirillum magneticum
Pathway
mag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
amb3140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mag03021
]
amb3140
03400 DNA repair and recombination proteins [BR:
mag03400
]
amb3140
Enzymes [BR:
mag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
amb3140
Transcription machinery [BR:
mag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
amb3140
DNA repair and recombination proteins [BR:
mag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
amb3140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
5-nucleotidase
Motif
Other DBs
NCBI-ProteinID:
BAE51944
UniProt:
Q2W2I1
LinkDB
All DBs
Position
complement(3389567..3393742)
Genome browser
AA seq
1391 aa
AA seq
DB search
MAKSYTGRKRVRKSFGRIPTVAPMPNLIEVQKSSYDHFLQMDTAPEQRGNVGLQEVFKSV
FPIKDFSERGTLEFVRYELEQPKYDVEECQQRGMTFAAPLKVTLRLVVWDIDEDTGSRSI
RDIKEQDVYMGDMPLMTSNGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAA
RVIPYRGSWLDFEFDAKDLVYVRIDRRRKLPVTTLLYALDGMNTAALRAQRAAEGRGLEQ
SEIKGMTSEEILSYFYGKVVYTRGPKGWKTPFDAERLKGVKLVSDLIDAKSGEKVADAGS
KMTPRLGKKLREAGLTDIVVFPEDMIGQYVAEDIINEQTGEIFTEAGDELTANLVAELEK
AGISELPVLAIDHINVGPYMRNTLAIDKNSSREEALIDIYRVMRPGEPPTLETAEALFTG
LFFDSERYDLSAVGRVKMNSRLNTPEVADTVRVLRKEDILGVIKVLVELKDGKGEIDDID
HLGNRRVRSVGELMENQYRVGLLRMERAIRERMSSVDIDSVMPHDLINAKPAAAAVREFF
GSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEG
PNIGLINSLATYARVNQYGFIEAPYRKVFDGRVTSDVVYLSAMEEGRYTVAQANSILDAD
GRFTEDLVSCRRAGDFVMVPPNEINMIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQ
RQAVPLIRAEAPLVGTGMEQAVARDSGAAITAKRTGVVDQVDATRVVIRATEETQASASG
VDIYNLLKFQRSNQNTCITQRPLVKVGDLIQKGDIIADGPSTQLGELALGRNVLVAFMPW
NGYNFEDSILISERIVRDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLDE
AGIVYIGAEVKPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGT
IVEVRVFSRRGVEKDERALAIERAEIERLAKDRDDERHILERSFFARLKALIIGKKVVSG
PKGIKAGTVLADANMDELHPSTWRNIAIDDDAVMADAEALKRAFDQQVDKLQERFENKVE
KLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRIVPLEDMPYLEDGQQV
DIVLNPLGVPSRMNVGQILETHLGWACAGLGQQIGGMLDKYKRNAATIIDLKSKLKDVYG
DAIYEDEIAGLADNEITELAHNLTPGVPIATPVFDGARESDIVAMLTKAGRSSSGQVTLV
DGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDTFEAGIPESFNVLVKELRSL
GLNVELTQRNY
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggctaaatcctatacgggtcgcaagcgtgtgcgcaaaagcttcgggcggattccgacc
gttgcgccgatgccgaacctgatcgaggtgcaaaaaagctcctacgatcatttcctccag
atggacacggctcccgagcagcgcggcaatgtcggcctgcaggaagtcttcaagtccgtg
ttccccatcaaggacttctccgagcgcggaaccctggagttcgtgcgctacgagctggag
cagcccaagtacgacgtcgaggagtgccagcagcgcggcatgaccttcgcggcgcccttg
aaggtgactctgcgcctggtggtgtgggacatcgacgaggataccggctcgcgctccatc
cgcgacatcaaggagcaggacgtctacatgggcgacatgcccctgatgacgtcgaacggc
actttcgtgatcaacggcaccgaacgcgtcatcgtctcccagatgcaccgcagcccgggc
gtgttcttcgatcacgacaagggcaagacccattcgtcgggcaagtatctgttcgccgcc
cgcgtcattccctatcgcggttcctggctggacttcgagttcgacgccaaggacctggtc
tatgtgcgcatcgaccgtcgccgcaagctgccggtgaccacgctgctgtatgcgctggac
ggcatgaacaccgcagcgctgcgcgcccagcgcgccgccgagggccgtggcctggagcag
agcgaaatcaagggcatgacctcggaagagatcctgtcctacttctacggcaaggtggtc
tacacccgcggccccaagggctggaagaccccgttcgatgccgagcgcctgaagggcgtc
aagctggtctccgacctgatcgatgccaagagcggcgagaaggtggccgatgccggcagc
aagatgacgccgcgcctgggcaagaagctgcgcgaagccggcctgaccgacatcgttgtc
ttccccgaggacatgatcggccagtatgtggccgaggacatcatcaacgagcagaccggc
gagatcttcaccgaggccggtgacgagctgacagccaatctggtggccgagctggagaag
gcgggcatcagcgaactgccggtgctggccatcgaccacatcaatgtcggcccgtacatg
cgcaacacgctggccatcgacaagaactcttcgcgcgaagaggccttgatcgacatctat
cgtgtgatgcgtccgggcgagccgccgactctcgaaaccgccgaggccctgttcaccggc
ctgttcttcgactccgagcgctacgacctgtcggccgtgggccgcgtcaagatgaactcg
cgcctcaacacccccgaggtggccgataccgtgcgcgtgctgcgcaaggaagacatcctg
ggcgtcatcaaggtgctggtcgagctgaaggacggcaagggcgagatcgacgacatcgat
cacctgggcaaccgccgcgtccgctcggtgggcgagctgatggagaatcagtatcgcgtc
ggcctgcttcgcatggagcgcgccatccgcgagcgcatgtcgtcggtggacatcgattcg
gtcatgccccatgacctgatcaatgccaagccggccgccgccgccgtgcgcgagttcttc
ggcagctcgcagctgtcgcagttcatggaccagaccaacccgctgtcggaaatcacccac
aagcgtcgtctctcggccctcgggccgggcggtctgacccgcgagcgcgccggcttcgag
gtgcgcgacgtgcacccgacccattacggccgcatctgcccgatcgagacgccggaaggc
ccgaacatcggtctgatcaactcgctggccacctatgcccgcgtcaaccagtacggcttc
atcgaggcgccgtaccgcaaggtgttcgacggccgggtcaccagcgacgtggtctatctt
tcggccatggaagaggggcgctacaccgtcgcccaggccaattccatcctggacgccgat
ggccgcttcaccgaggatctggtgtcgtgccgccgggccggcgacttcgtcatggttccg
cccaacgagatcaacatgatcgacgtgtcgccgaagcagttggtttcggtggccgccgcg
ctgatcccgttcctggagaacgacgacgccaaccgcgccctgatggggtcgaacatgcag
cgtcaggcggttccgctgatccgcgccgaggcccccctggtgggcaccggcatggagcag
gcggtggcccgtgactccggcgccgccatcaccgccaagcgtaccggcgtggtcgatcag
gtggacgccacccgcgtggtgattcgcgccaccgaggagacccaggcgtcggcttcgggc
gtggacatctacaacctgctgaagttccagcgttccaatcagaacacctgcatcacccag
cgtccgctggtgaaggtgggcgatctgatccagaagggcgacatcatcgccgatggcccc
tcgacccagctgggcgaactggccctgggccgcaacgtgctggtcgcgttcatgccctgg
aacggctacaacttcgaggattcgatcctcatctccgagcgcatcgtccgtgacgacgtc
ttcacctcgatccacatcgaggaattcgaagtcatggcccgcgacaccaagctgggccag
gaagaaatcacccgcgacatccccaatgtgggtgaagaggctctgaagaacctggacgag
gccggcatcgtctatatcggtgccgaggtgaagccgggcgacattctggtgggcaaggtg
acgccgaagggcgaatcgccgatgaccccggaagagaagctgctgcgcgctatcttcggc
gaaaaggcctcggacgttcgcgatacctcgctgcgtctgcctccgggcgtgtcgggcacc
atcgtcgaggtgcgggtcttctcgcgccgcggcgtggagaaggacgaacgcgccctggcc
atcgagcgggcggaaatcgagcgtctggccaaggaccgcgatgacgagcgtcacatcctg
gagcggtcgttcttcgcccgtctcaaggcgctgatcatcggcaagaaggtcgtctcgggt
cccaagggcatcaaggccggcaccgttctcgccgatgccaacatggacgagctgcatccc
agcacctggcgcaacatcgccatcgacgacgatgcggtgatggctgatgccgaggcgctg
aagcgcgctttcgaccagcaggtcgacaagctgcaggagcgttttgagaacaaggtcgag
aagctgcagcgcggcgacgagctgccgcccggcgtgatgaagatggtcaaggtgttcgtg
gcggtgaagcgcaagctgcagccgggcgacaagatggccggccgtcacggcaacaagggc
gtcatctcgcgcatcgttccgctggaagacatgccctatctggaagatggccagcaggtg
gacatcgtgctgaaccccctgggcgtgccgtcgcgcatgaacgtggggcagattctcgag
acccatctgggctgggcctgcgccggcctgggccagcagatcggcggtatgctcgacaag
tacaagcgcaacgccgcgaccatcattgatctgaaatccaagttgaaggacgtctacggc
gacgccatctatgaggacgagatcgccggtttggccgataacgagatcaccgaactggct
cacaacctgactccgggcgtgccgatcgccaccccggtgttcgacggcgcccgcgaaagc
gacatcgtcgccatgctgaccaaggcgggccggtcctcctccggccaggtgaccctggtt
gacggccgcaccggcgagccgttcgaccgtaaggttacggtgggctacatctacatgctg
aagctgcaccacctggtggacgacaagatccacgcccgctccatcggcccgtactcgctg
gtcacccagcagcccctgggcggtaaggcgcagttcggcggacagcggttcggtgaaatg
gaagtgtgggctctggaagcttacggtgccgcctacaccttgcaggaaatgctgacggtc
aagtcggacgacgtttccggccgcaccaaggtctacgaggccatcgtgcgcggcgacgac
accttcgaggccggtatccccgagtcgttcaacgtgctggtcaaggagcttcgctctctc
ggcctgaacgtcgaactgacccagcggaactactaa
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