Microbulbifer agarilyticus: Mag101_01650
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Entry
Mag101_01650 CDS
T04709
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
maga
Microbulbifer agarilyticus
Pathway
maga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mag101_01650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maga03019
]
Mag101_01650
03016 Transfer RNA biogenesis [BR:
maga03016
]
Mag101_01650
Enzymes [BR:
maga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Mag101_01650
Messenger RNA biogenesis [BR:
maga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mag101_01650
Transfer RNA biogenesis [BR:
maga03016
]
Prokaryotic type
tRNA degradation factors
Mag101_01650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
HTH_12
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AQQ66491
UniProt:
A0A1Q2M1B0
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All DBs
Position
401618..404542
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AA seq
974 aa
AA seq
DB search
MEANLNQDKTNPSAISDDPHAEREAEKYEKPVPSREFLLDVLEQQPGPVAWEAVADLLSI
DDEDRREGVRRRLIAMSRDGQIASNRAGDFGVLDKMSLVRGRVIGHRDGFGFVSAGDGGD
DLFLSHRQMRKVFDGDEVLARETPGGFRGKREGAVVRVIKHNTQQLAGRLYREDGVCFVR
PDNPRMTLDVLVAEGKCADAQSGQYVVVNITTQPGRNNLPQGEVAEILGDHLAPGMEIDV
AIRNYGIPHSWPAAVQTQTDTIADEVLEEDKAARIDLRQLPLVTIDGEDARDFDDAVYCE
VLPDGNWKLLVAIADVSHYVQINTALDQEAHQRGNSVYFPDFVVPMLPEKLSNGLCSLNP
HVDRLCMVCEMHIDPSGNILNFQFFEGLMRSHARFTYTQVGEMVEERDNRDSGVRKQFAA
LAPHIDNLHDLYGALRGARDRRGAIDFETTETRIMFDAARKIERIVPVQRNDAHKMIEEC
MLAANVCAAELMELAELPALYRVHDIPKQERLENLREYLGELGLRLEGGSEPQPSHYQEL
LSQADGRPDFHIIQTMLLRSMNQAVYQPENRGHFGLDYRAYAHFTSPIRRYPDLLLHRGL
RWLVRNGSANPAAVAKKVRQAPGAQVMEREQILPYTAVAMVELGEHCSMTERRADDATRD
VVSWLKCEYLQDHVGEVYRGVISAVTGFGLFVELEDLYVEGLIHVTALPKDYYHFEQAQQ
RLVGERSGTRFHLGDGVTVQVARVDLEERKVDFTFVELHPRPSYQTPKYRKPKADKKADK
KSDKESRKQDDSKVSKQAVKNSVTGEPTSAPDVENKAKKAAKKSRSGEESTQVSGRAMEM
AVEFQAERQRRGKHDFSKEAEKASPWGGGLKTKRTDKVEDEPRPIRKRKVGSDDAEVVPP
SEEIVSETEAGEESPPKKRRPKKTPPRKGGKRPAVAARKAAQKAEKAEAEQRAAKKAAKK
KLKKKLAKKSGGKK
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
ttggaagcaaatttgaatcaagataaaaccaacccctctgcgatctcggatgatcctcat
gccgagcgcgaggcggagaaatacgaaaaacccgttcccagccgcgagtttcttctcgat
gtgctggagcagcagccaggccccgtagcctgggaagcggtagcggacctgctctcgatt
gacgatgaagatcgccgcgagggtgtgcgccgtcgcttgattgccatgagccgagacgga
cagatcgccagcaaccgcgctggggatttcggtgtgctcgataaaatgagcctggtacgc
ggtcgcgtaatcggtcaccgcgacggcttcggctttgtgtccgcgggcgacggcggcgac
gacctgttcctgtctcaccgccagatgcgcaaagtatttgatggcgacgaagtgctggct
cgggaaactcccggcggcttccgcggcaagcgcgagggcgcggtggtgcgggtaatcaag
cacaacacccagcagctggccggacgcctgtatcgcgaagacggcgtttgctttgtgcgc
ccggataacccgcgtatgaccctcgacgtattggtcgcggaaggcaagtgtgccgatgca
caaagtggccagtatgtggtggtgaatatcaccacccagccgggccgcaataatttgccg
cagggtgaggttgcggaaattctcggcgaccaccttgccccggggatggaaatcgacgtt
gccattcgcaactacggtattccccatagctggcccgccgcggtacagacgcaaaccgac
acaatcgccgatgaggtgctggaagaagacaaggcggcgcgcattgatctgcgccagctg
ccgctggtcaccatcgacggtgaagatgcgcgggattttgacgatgccgtctactgtgaa
gtgctgccggatggcaattggaaactgctggtcgccattgccgatgtatctcattacgtg
cagatcaatactgcgctggaccaggaagcccaccagcgtggcaactcggtgtatttccct
gactttgttgtgccgatgctgccggagaaactctccaacggtttgtgctcactgaatccg
catgtggatcgcctgtgtatggtgtgtgaaatgcacatcgatccgtccggcaatatcctc
aacttccagttctttgaaggcctgatgcgcagccacgcgcgctttacctatacccaggtt
ggggaaatggttgaggagcgggataaccgcgatagtggtgttcgcaagcagtttgccgca
cttgcgccacacatcgacaacctgcacgacctttacggtgcgctgcgcggtgcgcgcgat
cgccgcggtgccatcgatttcgaaaccacagaaacgcggatcatgttcgacgctgcgcgg
aagatcgagcgcatcgtgccggtgcagcgcaacgacgcgcacaagatgatcgaagagtgc
atgcttgccgccaatgtgtgtgcggctgagctgatggagctggcggagttgccagcgctg
taccgcgtgcacgacattcccaagcaggagcggctggaaaacctgcgcgaataccttggc
gagctgggcttgcgtctggaagggggtagtgagccccagcccagccactaccaggaattg
ctttcgcaagcagacggtcgcccggatttccatattatccagactatgttgctgcgctcg
atgaaccaagcggtgtatcagccggagaatcgcggtcatttcgggctcgattatcgcgct
tatgcacacttcacctcgccgattcgtcgttacccggatctgctgctgcaccgcgggctg
cgctggctggtgcgcaatggcagcgccaatccggcagcggtggcaaagaaagtgcgccag
gcacccggtgcccaggtaatggagcgcgagcagattttgccgtacaccgccgttgccatg
gtggagttgggagagcactgctcgatgaccgagcgccgtgccgacgacgcaacccgcgac
gtggtcagctggctcaagtgtgaatacttgcaggaccatgtgggtgaggtgtaccgcggt
gttatcagcgcggtaaccggctttggcttgtttgtggaactggaagatctctatgtggag
ggtctgatccatgtcactgccttgccaaaggactactaccacttcgaacaggcgcaacag
cgccttgtcggagagcgcagcggtacgcgttttcatctaggtgatggagtgaccgtgcag
gtggcacgtgtggatcttgaggagcgtaaagtcgatttcacatttgtcgaattgcatccg
cgccccagctaccagacacccaagtatcgcaagcctaaagccgataaaaaggctgataaa
aagtcagacaaagaatcccgtaagcaagatgacagcaaggttagtaaacaagccgtgaag
aacagtgttaccggtgagccgacatcggcgccagatgtggaaaacaaggcgaagaaagcg
gcgaaaaaatcccgttccggagaggaatcaactcaggtcagtggccgcgcgatggaaatg
gcagtggagtttcaggccgagcgccaacgtcgtggcaagcacgactttagcaaagaggcg
gaaaaggccagcccctggggtggtggactgaaaaccaagcgcaccgacaaggttgaagat
gagccgcgtccgattcgtaagcgcaaggtgggcagcgatgacgctgaggtagtgccgcca
tcagaagagatcgtttccgaaacggaagccggcgaagagtctccaccgaaaaagcgtcgc
ccgaagaaaacaccaccgcgcaaaggtggcaagcgtccggcagtagccgcgcgcaaagct
gcgcagaaagcagaaaaggccgaagcagagcagcgtgcagccaagaaagcagcgaagaaa
aagctgaagaaaaaactggcgaagaaatcaggtgggaagaaataa
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