Magnetospirillum sp. ME-1: WV31_07610
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Entry
WV31_07610 CDS
T04817
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
magn
Magnetospirillum sp. ME-1
Pathway
magn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
magn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WV31_07610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
magn03400
]
WV31_07610
Enzymes [BR:
magn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WV31_07610
DNA repair and recombination proteins [BR:
magn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WV31_07610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
SecA_DEAD
AAA_16
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
ARJ65529
UniProt:
A0A1W6CL49
LinkDB
All DBs
Position
complement(1657483..1660956)
Genome browser
AA seq
1157 aa
AA seq
DB search
MKNLDKLITEPGRRKVAGAPEGRDALLLAELAAAPQATGGILHVARDEGRMARVAEALSF
FAPDLCVLEFPAWDCVPYDRVSPNVDVVARRIDTLARLADGVKGSFVVLTTVPALAQRVP
PREALAQATLDARKGSRLSMDKLTAFLSKNGYVRADTVMEPGEYAVRGGIIDLFPPGSAE
PLRLDFFGDEIDSVRSFDPMSQRTTGNVEGFVCRPVAELGLDEASIARFRANYREMFGVV
QGPDPLYEAISEGIRFNGMEHWLPLFHDGLDTMFAYVPDAVVVLDHQSDEALTARHALVL
EYFDARAGLAGSGLTESGMVYHPIPPERLYLERPEWDRLLGMRPVLHLSPFDPVEETEAD
AGGRLGRDFADQRARPGINVYDCVREHAEEQAKAGRRLVIAAWTQGSRDRLAGVLKDHGI
KGIEPVESWAEARALDKGRVAAAVLGLDHGFTTPDLAVVTEQDILGDRLARPARKKKKGA
QFIAEASALAEGDLVVHVEHGIGRYDGLVAVEVSGAPHDCLRVIYDGGDKLFVPVENIDV
LTRFGSEQAGVSLDKLGGTAWQARKAKLKKRIRDIADQLIGIAAQRKMRQGEALTPAEGL
YDEFCARFPFAETDDQLRAIEDSIADLASGKPMDRLICGDVGFGKTEVALRVAFVAALQG
LQVAVVVPTTLLARQHYRTFKERFAGLPVRVEQLSRLVTAKKASEVKAGITDGSVDIVVG
THALLAKGIGFKRLGLLIIDEEQHFGVAHKERLKQLKSDVHVLTLTATPIPRTLQMALSG
VKEMSVIATPPVDRLAVRTFVLPYDPVVLREAILRERYRGGQVFYVCPRLADIDRVAERL
AKLVPEVKTAVAHGRLAPADLEEVMVAFGDKQYDVLLSTNIIESGIDMPSVNTLIIHRAD
MFGLGQLYQLRGRVGRSKTRGYAYFTLPNDKVLSKAAEKRLQVMQALDTLGAGFQLASHD
LDIRGAGNLLGEEQSGHIREVGIELYQQLLEEAVAAAKGGQGGEAAEEWSPQIGVGTPVL
IPETYVADLSVRLSLYRRIGSLADQAEIEALAAELIDRFGKLPPEVENLLEVVAIKALCK
LAGIDKVDSGPKGAVVSLRGNVFANPAALVQFIARSAGTCKIRPDHKIVFLRAWEDPKER
IIGLRKVIGKLAELAAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaacctggataaacttatcactgagcccgggcgccgcaaggtcgccggcgcgccg
gaagggcgcgacgccctgctgctggccgaactggcggcggcaccgcaagccaccggcggc
atactgcacgtggcccgcgacgagggccgcatggcaagggtggccgaggcgctgtccttc
ttcgcccccgacctttgcgtcctggaatttcccgcctgggattgcgtgccctatgaccgc
gtgtcgcccaacgtggacgtggtggcgcggcgcatcgacacgttggcccggctcgccgac
ggggtgaagggctccttcgtggtgctgaccaccgttcccgccctggcccaaagggtgccg
ccccgggaagccctggcccaggcgacgctcgacgcccgcaaggggtctcgtctgtccatg
gacaagctgacggcctttctgtcgaagaacggctatgtccgcgccgacacggtgatggag
cccggcgaatacgcggtgcgcggcggcatcatcgacctgttcccgcccggctcggccgag
ccgcttcgcctcgacttcttcggcgacgagatcgacagcgtgcggtccttcgatcccatg
agccagcgcaccaccggcaatgtggagggcttcgtgtgccgcccggtggcggaactgggc
ctggacgaggcttccatcgcccgcttccgcgccaattaccgcgagatgttcggggtggtg
caggggccggacccgctgtacgaggccatctcggagggcatccgcttcaacggtatggag
cattggctgccgctgttccatgacggcctcgacacaatgttcgcctatgtgccggatgct
gtggtggtgctggaccaccagtcggacgaggcgttgaccgcccgccatgccctggtgctg
gaatatttcgacgcccgtgccgggctggcgggatcgggcctcaccgaatccggcatggtc
taccatcccattccgcccgaacggctttatctcgaacgtcccgaatgggaccggctgctg
ggcatgcgccccgttctccacctgtcgcccttcgatccggtggaggagaccgaggccgat
gccggcgggcggctgggccgcgacttcgctgatcagcgggcccggccgggaatcaacgtc
tacgactgcgtgcgcgaacacgccgaggaacaggccaaggccggccgccggctggtgatc
gccgcctggacccagggctcgcgcgatcgcctcgccggggtgctgaaggaccacggcatc
aagggtatcgagccggtggagagctgggccgaggcccgggccctggacaaggggcgggtg
gcggccgccgttctcggcctcgatcacggcttcaccacgcccgatctggccgtggtcacc
gagcaggacatcctgggcgaccgtctggcccggcccgcccgcaagaagaaaaagggcgcc
cagttcatcgccgaagcctcggcgctcgccgaaggcgatctggtggtgcacgtcgagcac
ggcatcggccgctatgacggtctggtggccgtcgaggtgtcgggcgccccccatgattgc
ctgcgggtgatctatgacggcggcgacaagctgttcgtgccggtggaaaacatcgacgtg
ctgacccgcttcggctcggagcaggccggcgtgtccctggacaagctgggcggcacggcg
tggcaggccaggaaggccaagctcaagaaacgcatccgcgacatcgccgaccagctgatc
ggcatcgccgcccagcgcaagatgcgccagggcgaggcgctgaccccggccgaggggctg
tacgacgagttctgcgcccgtttccccttcgccgaaaccgacgaccagctgcgcgccatc
gaggattccatcgccgatctggcgagcggcaagcccatggaccgcctgatctgcggcgac
gtgggattcggcaagaccgaggtggccttgcgcgtcgccttcgtggcggcgttgcaaggc
cttcaggtggccgtggtggtgcccaccacgctgctggcccgccagcattaccgcaccttc
aaggagcgtttcgccggcctgccggtgcgcgtcgagcagctgtcccggctggtgaccgcc
aagaaggcgtccgaggtcaaggccggcatcaccgacggctcggtggacatcgtggtcggc
acccatgcgctgctggccaagggaatcggcttcaagcgcctggggctgttgatcatcgac
gaggagcagcatttcggcgtcgcccacaaggagcggctgaagcagctgaaatccgacgtc
cacgttcttacgctcaccgccacgcccattccccgcacgctgcagatggccctgtcgggg
gtgaaggagatgagcgtcatcgccacgccgccggtggaccgcctcgccgtgcgcaccttc
gtgctgccctatgatccggtggtgctgcgcgaagccatcctgcgtgagcggtaccggggc
gggcaggtgttctatgtctgcccgcgtctggccgatatcgaccgggtggccgaacgcctc
gccaagctggtgcccgaggtcaagaccgccgtggcccatggccgtctggcgcccgccgat
ctggaagaggtgatggtggccttcggcgacaagcagtacgacgtgctgctgtccaccaac
atcatcgaatccggcatcgacatgccatccgtcaataccctgatcatccaccgcgccgac
atgttcggcctgggccagctttaccagctgcgcggacgggtggggcgctccaagacccgt
ggctacgcttatttcaccctgcccaacgacaaggtgctgtccaaggcggcggaaaagcgg
cttcaggtcatgcaggcgctggacaccctgggggccgggttccagctggccagccacgat
ctcgacatccggggcgccggcaatctgctgggcgaggagcagtcgggccatatccgcgaa
gtgggtatcgagctctaccagcagcttctggaagaggccgtggccgccgccaagggcggg
caggggggcgaggcggccgaggaatggtcgccgcagatcggcgtcggcaccccggtgctg
atccccgagacctatgtggccgacctgtcggtgcgcctgtcgctctatcgccgcatcggc
tcgcttgccgatcaggcggagatcgaggccctggccgccgagctcatcgaccgcttcggc
aagctgccgcccgaggtggagaacctgctggaagtggtcgccatcaaggccttgtgcaag
ctggccggcatcgacaaggtggattcggggcccaagggcgccgtggtctccttgcgcggc
aacgtctttgccaacccggccgccctggtgcagttcatcgcgcgctccgccggcacctgc
aagatccgtcccgaccacaagatcgtcttcctgcgcgcctgggaggaccccaaggagcgg
attatcggcctgcgcaaggtcatcggcaaactggcggaattggcagccgcctga
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