Magnetospirillum sp. XM-1: XM1_1508
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Entry
XM1_1508 CDS
T04231
Symbol
ddlB
Name
(GenBank) D-alanine:D-alanine ligase（D-alanine--D-alanine ligase,1-304）
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx00470
D-Amino acid metabolism
magx00550
Peptidoglycan biosynthesis
magx01100
Metabolic pathways
magx01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
XM1_1508 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
XM1_1508 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
XM1_1508 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
magx01011
]
XM1_1508 (ddlB)
Enzymes [BR:
magx01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
XM1_1508 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
magx01011
]
Precursor biosynthesis
Amino acid ligase
XM1_1508 (ddlB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
B12-binding
ATP-grasp_3
ATP-grasp_4
GARS_A
Motif
Other DBs
NCBI-ProteinID:
CUW38577
UniProt:
A0A0U5N0P3
LinkDB
All DBs
Position
I:complement(1476639..1477559)
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AA seq
306 aa
AA seq
DB search
MTTKRVTVLMGGASAERDVSLRSGAAAAKALEQAGFEVALVDCDRNPAELVRAITETKPD
VVFNALHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKAFARALFQAAGIPVAQGRV
ITRAECNGPDPLPRPFVVKPLNEGSSVGVFIVRENQPSPLPGWPFDADEVLVESFIPGRE
LTAAVMGDRALGVLEITSDHGFYDYEAKYAPGGSRHIMPAPIPEADYAEACRLAVAAHKA
LGCRGVSRADLRYDDTNPGQPPRLVMLEVNTQPGMTGTSLVPEMAAYQGISFPDLVRWMV
EEARCD
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccaagcgcgtcaccgtcctgatggggggagcctcggccgagcgcgacgtgtcc
ttgcgttcgggcgccgccgccgccaaggcgctggagcaggccggcttcgaggtcgccctg
gtggattgcgaccgcaacccggccgaactggtccgcgccatcaccgagaccaagcccgac
gtggtgttcaacgcgctgcacggccgcttcggcgaggacggctgcgtccagggcgtgctg
aacctgctcggcgtgccctacacccattccggcctgctggcctcggcggcagccatggac
aaggccttcgcccgcgccctgttccaggccgccggcattcccgtggcccagggccgggtg
atcacccgcgccgaatgtaatggccccgatcccctgccccgtcccttcgtggtcaagccc
ctgaacgagggctcgtcggtgggcgtgttcatcgtgcgcgagaaccagccctcgccgctg
cccggctggccgttcgacgccgacgaggtactggtggaaagcttcatccccggacgcgag
ctgaccgccgccgtcatgggcgaccgcgcgctcggcgtgctcgagatcacctcggaccac
ggcttctacgattacgaggccaagtacgcgccgggcggctcgcgccacatcatgcccgcg
cccatccccgaggccgattacgccgaggcctgccgcctggcggtcgccgcccacaaggcg
ctgggctgccgtggcgtttcgcgcgccgatctgcgttacgacgataccaatccgggccag
ccgccccggctcgtcatgctggaggtcaacacccagcccggcatgaccggcacctcgctg
gtccccgagatggccgcataccaggggatcagcttccccgatctggtgcggtggatggtg
gaggaggcgcgatgcgactga
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