Mycolicibacterium aichiense: MAIC_10430
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Entry
MAIC_10430 CDS
T06903
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maic
Mycolicibacterium aichiense
Pathway
maic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MAIC_10430 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maic03400
]
MAIC_10430 (mfd)
Enzymes [BR:
maic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MAIC_10430 (mfd)
DNA repair and recombination proteins [BR:
maic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MAIC_10430 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
MFD_D3
DUF3638
UB2H
Motif
Other DBs
NCBI-ProteinID:
BBX06240
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All DBs
Position
1063806..1067468
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AA seq
1220 aa
AA seq
DB search
MTAPGQEYVHTPIAGLVDLALTAPEFVELAQRAAERPEELALVGPASSQLYAACAVARKG
PLLVVAATGRDADDLTAELRGVFGDSAAMFPSWETLPHERLSPGVDTVGARLMLLRRLAR
PDDERLGPPLCVVVTTVRSLLQPMGPDVGTVEPVTLTSGAEFDFDALIARLVELAYTRVD
MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEISEMRMFSVADQRSIPEIDVDSVVAV
PCRELLLTDEVRAHAAELLAGRPHGDNNQVSGSVADMLAKLAEGIPVDGMEALQPVLRPD
DLTLLVDHLPDGTPILVCDPEKVRTRAADLIKTGREFLEASWSVAALGGDAPIDIEELGG
SGFRELDEVRAAARATGHPWWTVSQLAAEDAIELDVRAAPSARGQQSNVDEIFAMLRAHV
MTGGFAAVVAPGTGTAHRVVEQLGERDTPAAMLEAGQAPKAGVVGVLKGPLHDGIIVPGA
NLVVITETDLTGNRVTGTEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTV
GGARREYLVLEYASSKRGQSADKLFVPMDSLDQLSRYVGGQEPSLSRLGGSDWTNTKTKA
RKAVREIASELVALYAKRQAAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDME
KPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFSARMAGFP
VTVKGLSRFTDPAESRAVIEGMADGSVDIVIGTHRLLQTAIRWKDLGLVIVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGAHDDKQ
VAAALRRELLRDGQVFYIHNRVSSIDAAAARVRQLVPEARVVVAHGQMPEELLERTVEGF
WNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYP
KEMPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVR
LVGEAVEAYRAAADGQTVTTSEEPKDVRIDLPVDANLPPDYIGSDRLRLEAYRRLAGAGD
DAGIVSVVEELTDRYGPLPEPAQRLVAMARLRLVCRGYGVTEVAATGSGSATTIRVSPLT
LPDSAQLRLKRVYPGANYRATTSTVTVPIPRSGSGVGAPRIRDLELVQMVADLLRALDGQ
PHGELDITTHLPAGTTRGER
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcaggagtatgttcacaccccgatcgcggggctggtggacttggcg
ctgaccgcgccggaatttgtcgaactcgcgcagcgggccgccgagcgtcccgaagaactc
gcgctggtcggaccggcaagttctcagctgtatgccgcctgcgcggtcgcccgtaagggt
ccgctgctggtggttgccgcgacgggccgcgacgccgacgacctcaccgccgaactgcgg
ggtgtgttcggcgactcggcggcgatgttcccgtcctgggagaccctgccgcacgagcgg
ctctcgcccggggtcgacactgtgggtgcgcggctgatgctgctgcgccggttggcccgc
cccgacgacgagcgccttgggccgccgctgtgcgtggtggtcaccacggtgcgctcgctg
ctgcagccgatgggccccgacgtcggcaccgtcgaaccggtgacgctcacgtccggcgct
gagttcgatttcgacgccttgatcgcacgcttggtcgagctggcgtacacccgcgtcgac
atggtcggcaagcgcggcgaattcgcggtccgcggcggcattttggatctcttcccgccg
acggccgagcatccggtccgggtggagttctggggcgacgagatcagcgagatgcggatg
ttctcggtggccgatcagcgatccatccctgagatcgacgtggacagcgtggtcgcggtc
ccgtgccgcgagctgttgctcaccgacgaggttcgcgcgcatgccgccgagttgctggcc
ggccgcccgcacggcgataacaaccaggtcagcggcagcgtcgccgacatgctggccaag
ctggccgagggcatcccggtggacgggatggaagcgctgcagccggtgctgcgacccgac
gacctgaccctgctcgtcgaccacctgcccgatggcaccccgattctggtgtgcgatccg
gagaaggtgcgcacccgcgcggccgacctgatcaagaccggccgggagttcctcgaagcg
tcctggtcggtggccgctctgggcggtgacgccccgatcgacatcgaagaactcggtggg
tccgggttccgcgaactcgacgaggtccgggccgcggcccgcgcgaccggtcacccgtgg
tggacggtgagccagctggccgccgaggacgccatcgaactcgacgtgcgggccgccccg
tcggcccgcggccagcagagcaatgtcgacgagattttcgcgatgctgcgcgcccatgtg
atgaccggcgggttcgccgccgtcgtggccccgggtaccggcaccgcacaccgggtcgtc
gagcaactcggcgagcgagacaccccggccgcgatgctggaagccggccaggcgccgaag
gccggtgtggtcggcgtgctcaaaggcccgctgcacgacggcatcatcgtgcccggcgcc
aacctggtggtgatcaccgaaaccgacctgaccggcaatcgggtgaccggcaccgagggc
aagcggctggcggcaaagcgccgcaacaccgttgacccgctggcgctgaccgcgggcgac
ctggtggtgcacgaccagcacggtatcgggcgattcgtcgagatggtcgagcggaccgtc
ggcggcgcgcggcgcgagtacctggtgctggagtacgcgtccagcaagcgggggcagtcg
gccgacaaactgttcgtgccgatggactcccttgatcagctgtcccgctacgtcggtggc
caggagcccagcctgagccgtctgggcgggagcgactggaccaacacaaagaccaaggcg
cgcaaggctgttcgcgagatcgccagcgagctggtggcgctctacgccaagcggcaggcc
gcgccgggccacgcgttcggcccggacaccccgtggcaggccgagatggaggacgcgttc
ggtttcaccgagacgatcgaccagctgaccgccatccaggaggtcaagtccgacatggag
aagccggtcccgatggaccgggtcatctgcggcgacgtcggttacggcaagaccgagatc
gcggtgcgcgcggcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtgccg
accacgctgctggccgatcagcacctgcagacgttcagtgcgcggatggccggtttcccg
gtgacggtgaagggcctgtcgcggttcaccgacccggccgagtcgcgtgcggtgatcgag
ggaatggccgacggcagcgtcgacatcgtcatcggcacgcaccggctgctgcagaccgcg
atccgctggaaggacctcggcctggtgatcgtcgacgaggagcagcgtttcggcgtcgag
cacaaagagcacatcaaggcgttgcgcacccacgtcgatgtgctgaccatgagcgccacc
ccgattccgcgaacgctggagatgagcctggccggcatccgggagatgtcgaccatcctc
accccaccggaggagcgctacccggtgctgacctatgtcggtgcccacgacgacaagcag
gtcgccgcggcgctgcggcgcgaattgctgcgagacgggcaggttttctacatccacaac
cgggtcagcagcatcgacgccgcggccgcacgagtccgccagctcgtacctgaggcgcgg
gtcgtggtcgcgcacggccagatgcccgaagagctgttggagcgcaccgtcgagggcttc
tggaaccgcgagtacgacatcctggtctgcaccacgatcgtcgagacgggtctggacatt
tcgaacgccaacaccctgatcgtcgagcgcgccgataccttcggcctgtcccagctgcat
cagcttcgtggccgggtcggccgcagccgcgagcgtggctacgcctacttcctgtacccg
aaggagatgccgctcaccgagaccgcctacgaccggctggcgaccatcgcccagaacaac
gaactcggtgcgggcatggcagttgccatgaaggacttggagattcgtggcgcgggcaat
gtgctcggtgccgaacagtccggccatgtcgccggcgtgggattcgacctgtacgtccgg
ctggtgggcgaggccgtcgaggcctaccgggccgcggccgacggccagacggtcaccact
tccgaggaacccaaggatgtgcgcatcgatctgccggtcgacgccaatctgccgccggac
tacatcggcagtgaccggctgcggctggaagcctatcgccggctggccggggccggcgac
gatgcgggcatcgtctcggtggtcgaagaactcaccgaccgctacggaccgctgcccgaa
cccgcgcagcggcttgtcgcgatggcccggctgcgcctggtgtgccgcgggtacggggtg
acagaggttgctgccaccggaagtggttcggccacaacgattcgcgtttcgccgttgacg
ctgcccgactccgcgcagctccgactgaaacgggtatatcccggtgcgaactatcgtgcg
acgacctccacggtgacggtgccgattccgcggtcgggcagcggtgtcggcgccccccgg
atccgcgacctggagctggtgcagatggtggccgatctgcttcgcgcacttgacggacaa
ccccacggcgagcttgatataacgacgcatctaccggcaggcacgacgaggggagagcgg
tga
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