Monopterus albus (swamp eel): 109960561
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Entry
109960561 CDS
T05607
Symbol
col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
malb
Monopterus albus (swamp eel)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
109960561
NCBI-ProteinID:
XP_020456407
LinkDB
All DBs
Position
Unknown
AA seq
1754 aa
AA seq
DB search
MEELTREMDFSGGLSGERGVTETITSTTRLTSLPPKGTSGSNHRNMSSSVGGLGLEKNVF
TQSSGGTYFSSSSAGMNTGSYSSSSGVYLGGDSSGGGDGGGGYIDRDGYGSVGGGGGSYV
VSSVSKVRSSSSGGARRAQIAGSAGGLSPVFREKKKISSHSGGYDGSSSANSSPEFTRKD
YGNYCSSATRGRTESRESEIRVRLQSASPTASRWTELDDVKKLLKVRSNSLSPTRSSDAS
MSLPVPKKAGVETKTVSVASQSDLTSFGSGVRADGFHTIGTSGVYDTRVSAGQFDTGVKS
GPYNVTLISSQYNTDVKSSQYDTSLKSGQFDTGVKSSQYGGSLKSGQYNTGVQSGQYGIS
GKSGQYDTSLRSGHYDTSLRSGQYDTLDAIFPSFTWSTATLPSASTTGVTGSTSNYQYQA
STNNMSGGTSPLSHTAPSSLSVYGFQNNLAPVSGSVLTTGGAHVNASQGYGVQKNVSNGV
GVISSGVSTATRSQTDDAYKKDYKFMVSDKENVPAKRDAEMLILAKDSGKQFTSSSTGVG
GGSLSGDSIKKEKLISSYSETVPLKAETGGSYYGSSGVVMKDKATYAEIHRDSGIFGGGG
FCCCSDACCSWWKWLLGLLLLSLLLLGLLFGLIALAEDVRKLKNRVATLEAESLAATAYI
SRLSGSANDIGTSVDGGGTSNTDITLIAGAGRGRSSSRTQVGIATGTGVGSTGGNEIGVS
TGSSSGAATGTSEFGAGGAGTGFSGGVSRVGAGTAGTSFGFGSAVSGGQIDAAALQLAIQ
NMMRAEMQSQAFRAFLASSVQGERGLPGPKGDSGSKGDPGFPGITGPPGAMGHAGPEGPK
GQKGNQGEHGMEGPPGIRGREGPPGPRGEPGSQGFGVKGDRGLPGDPGPVGPTGPVGPKG
APGVPGPTGQPGSVGFRGEAGPPGPKGDRGLAGFQGLKGEMGDKGSRGLQGEPGLPGLPG
PAGEKGLKGSIGLSGQDGAKGSRGDQGPAGPPGIRGPPGTPGDAGLPGTPGLQGPPGIPG
NPGQPGAKGQTGEPGRIINAAGSTAVGIPGPPGPAGPPGPAGPPGLSGPIGPAGLPGQPG
PKGDRGYKGEQGEAGATVRVTETISSSRSQNQFGAAGASAVAGPPGPPGPPGPPGRPGDS
RQGPPGPPGPPGPTGYGIPGPKGDKGESGFASSSGTFYTGPPGPPGPPGPKGSIGSPGPR
GYQGEPGQPGTSGRAVAIGPPGPPGPPGRPGPPGIKGDTGAPGVSGSSRGSVSVTSGPPG
PPGPPGPPGQPGTYAASTEMRQYISDYLSRSTLAGPPGPPGLPGPPGTFTGSIETIASHV
ITYLQRSGSGLSLGSSGAGSGSLTVSGLIAMLQRDDVRRYLSGAPGPQGPQGPPGPPGTS
GGFSSSYSVEEVASYVFTIMNDRGIARGPPGPPGQRGPPGPAAAGGSGIATATIDYSELM
RNSDFRAWISSGLQQHGPPGPPGNPGSPGPPGPQGPPGVSTATVVGGRGYSWEDIQRYLQ
SSNFRGLPGPPGPPGPQGPPGSYTGSISYSGNFPRESIRAEIHEYLTSDGVRRAITGPSG
PPGPAGPVGQKGERGEPGYIQTYTQSQSYSQGESRQGSERRATDISRLSETLDYSNVALK
VTDYIKNQGLLQEYLVEGPWRAHVRAIQGPTGPPGPPGPPGYSRVFAAYGNVTADLMDFF
RAYGTIPGPTGSPGPKGDRGYPGPKGDKGDPGQPGLPGLPGSYTIQIPHRVQRRDTGNKV
AGHRQSNHRQANGG
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atggaggagttaacaagagagatggacttctcaggaggcttgtcgggagaaaggggtgtg
actgaaactataacctccacgaccaggctgacgtctctgcccccaaagggaaccagcgga
tcaaatcacaggaatatgtccagcagtgttggagggctgggcttggagaagaatgtcttt
acccagagcagtggtggaacttatttctcttcatcctctgcaggtatgaacaccggcagc
tacagttcctcctcaggagtttacctcggaggagactcctcaggaggaggcgatggaggg
gggggctacatcgaccgagatgggtacggaagtgtaggtggaggcggaggcagttatgtt
gtgagctcggtgtcaaaagtacgatccagctcgtcgggcggtgccaggagagcacaaatc
gctggctcagcaggaggcctgtcaccagttttccgggagaagaagaaaatatccagccac
tcaggaggttatgacggaagttccagtgcaaattcttctccagaatttacccgcaaagat
tatggaaactattgctccagcgccacaagagggagaactgaaagcagagagagcgagatc
agagtccggttacaaagtgcctctcccactgcctccagatggacggagctggatgacgtg
aagaagctgttgaaggtacgctccaacagcctcagccccactcgctcctctgatgcctcc
atgtccctgcctgtcccaaaaaaggctggcgtggaaaccaagacggtctctgtggcatct
cagtcagatttaacatcatttggctcaggcgtgagagcagatggatttcacaccattggt
acatcaggtgtgtatgataccagagtgtcagctgggcagtttgatactggtgtaaaatca
ggcccatataatgtcactctgatatcgagtcagtataacactgatgtgaaatcaagccag
tatgataccagtctgaaatcaggacagtttgatactggcgtcaaatcaagccagtatggt
ggtagtctgaaatcaggccagtataatactggtgtgcagtcaggacaatatggtatcagt
gggaaatcaggccaatatgacaccagtctgagatcaggccactatgacaccagtctgcgg
tcaggccagtacgacacactggatgctatattcccatctttcacttggtccaccgccacg
ctgccgtccgcctccaccacgggggtcactggcagcaccagcaactaccagtaccaggcc
agcactaacaacatgtcaggaggaacctcgccgctcagtcacaccgcaccctcctccctg
tcagtttacggatttcagaataatctggcgcccgtctctggcagtgtgctcaccactggt
ggagcccatgtaaatgccagccaaggttatggtgttcagaagaatgtgtcaaatggtgtt
ggtgtcatcagctctggagtctctacagccactcgatcccagactgatgatgcatataag
aaagactataagttcatggtgtctgacaaggagaacgttccagccaagagggatgcagaa
atgctcattctggctaaggacagtgggaagcagttcaccagcagcagcactggggtagga
ggagggtcactatcgggggattcaataaagaaagagaagcttatttccagctacagtgag
acggttccactgaaggcagagacaggcggctcttactatggatcatctggagttgtaatg
aaagacaaagccacctacgcagagattcacagggacagcggcatctttggaggaggaggg
ttttgctgctgctccgacgcgtgttgctcctggtggaaatggctgctgggtcttctcctc
ctctccttgctcctgctgggactcctgtttggcctcattgcattggctgaggatgtgaga
aagctgaaaaatcgagtggctaccttggaggctgagtctttagccgcgactgcttatatc
agtcggctgtcaggttctgccaatgacatcggcaccagtgtggacggcggaggtactagc
aacactgacatcacactaatcgccggtgctggacgtggacgctcaagttccagaacacaa
gttgggattgcaactggtactggggtgggttccactggtggcaatgagattggtgttagc
accggcagtagttctggtgctgccactgggaccagtgagttcggtgctggaggtgccggc
acgggcttcagcgggggcgtgagcagagtcggcgctggcactgctggtaccagctttggc
tttgggagcgccgtgagcggaggacaaatagatgctgctgctcttcagttggccatccag
aatatgatgagagctgaaatgcaatcacaggcattcagagcatttctagcatcttcagtg
cagggagagagaggactacctggacctaaaggggattctggatctaaaggagatcctggt
ttccctggaattacaggtcctccgggtgcaatgggacatgcaggccctgagggtcctaaa
ggacagaaaggaaaccaaggtgaacatggcatggaggggccaccaggtatcaggggtcgt
gaaggcccacctggccccagaggtgagccaggttctcaaggctttggagtgaaaggtgac
agaggtttacctggagatccggggcctgtgggacctactggcccagttggacccaaaggt
gcacctggagttcctggcccaacaggtcaaccaggttctgtaggtttccgtggtgaggca
ggaccacctgggcctaaaggtgaccgagggcttgctggatttcaaggacttaaaggtgaa
atgggtgacaaaggttccagaggtctgcaaggtgaacctggcttaccaggtctgcctggg
ccagctggagagaaaggactcaaaggctcaatagggctgtctggacaagatggcgcaaaa
ggatcaagaggtgaccaaggaccagctggacccccaggaatccgaggacctccagggact
ccaggagatgctggacttccaggaacacctgggcttcaaggacccccaggtataccaggg
aatccaggacaaccaggggccaaaggtcaaactggtgaaccaggaagaatcatcaatgca
gccggctccactgctgttggcatccccgggccacctgggcctgctgggcctcctggccct
gccgggcctccagggttatcaggtcccatcggccctgctggtcttcctggccaacctggt
cctaaaggtgacagaggatataagggagagcagggagaagcaggagcaacagtgagagtg
actgaaactataagctcatccagatctcagaatcagtttggtgctgctggagcctcagca
gtagctggtccacctggcccacctggcccacctgggcctcctggacgcccaggagattca
agacaaggacctccaggaccgcctgggcctccaggtccaacaggttatggaataccagga
cctaaaggagacaaaggagagtcaggctttgcttccagctctggaacattttatactgga
ccaccgggaccacctgggcctcctggacctaaaggatcaataggctctcctggaccaaga
ggataccaaggtgaaccaggacagcccggcacctcaggaagagcagtggcaattggacca
ccaggtccaccgggacctcctggacgtccaggaccaccaggaatcaaaggggacactgga
gctcctggtgtttctggctcttccagaggttcagtctcagtcacctcaggccctcctggt
cccccaggtcctcctggccctccaggccagcccggcacttatgctgcttctactgagatg
cgccagtacatcagtgattatctaagtagaagcacactggctggtccccctggacctcca
ggtctacccgggcctccaggaactttcacgggctctatagaaaccattgccagccatgtc
atcacatacctgcaacgctctggctcaggtctgagcttgggttcttcaggagctggctct
ggatccctgacagtcagtggtctcattgccatgcttcagagagatgatgtgaggagatat
ttgtcaggggcaccagggcctcaagggccacaaggaccaccgggaccaccagggacatca
ggaggattttcaagcagttatagtgtagaggaggtggccagttatgtcttcaccatcatg
aatgaccgagggattgccagaggtccgcccgggccgcctggtcaacgcggccctcctggt
cctgctgctgcaggaggctctggaattgccaccgctacaatagactactctgaactgatg
agaaattcagacttccgtgcatggattagctctggtttacaacaacatggtcctcctggt
cctccgggtaacccaggctctcctggccctcctggccctcaggggccgccaggagtctcc
actgccactgttgtgggaggtcgtggctacagctgggaggatattcagcgttacctgcag
agttctaactttagaggtcttcccggccctcctggtcccccaggtccacagggaccacca
ggcagttacaccggatcaatttcctacagtggaaacttccctcgggaaagcattcgtgct
gaaattcacgagtatctgaccagtgacggtgttcgtcgtgccatcactggaccttcaggg
cctcctgggcctgcaggaccagtgggccagaaaggtgaacgtggagagccaggttacatc
cagacctacacacaaagccagagctactctcagggcgagtcccgccaaggctctgagcgc
cgagcgactgatataagcaggctctcggagacactggactactccaatgttgcattgaaa
gttacagactacatcaagaatcaaggcctgctgcaggagtacctggttgaaggtccttgg
agggcacatgtaagagcgattcaaggccctactggtccacccggccctcctggaccacct
ggttatagccgtgtctttgcggcttatggcaatgtcacagctgacctcatggactttttc
agagcctatggcaccattcctggccctacaggaagccctggaccaaagggagacagaggg
tacccaggacccaaaggagacaagggtgatcctggacagccaggtttaccaggactacca
gggtcgtacactatccaaattccacacagagtgcaaaggagggatacaggtaataaagtg
gctggtcatcgccagagcaatcatcgtcaagccaatggtggctaa
DBGET
integrated database retrieval system
