Monopterus albus (swamp eel): 109966845
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Entry
109966845 CDS
T05607
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
malb
Monopterus albus (swamp eel)
Pathway
malb03013
Nucleocytoplasmic transport
malb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109966845 (upf1)
03015 mRNA surveillance pathway
109966845 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
malb03019
]
109966845 (upf1)
Enzymes [BR:
malb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109966845 (upf1)
5.6.2.5 RNA 5'-3' helicase
109966845 (upf1)
Messenger RNA biogenesis [BR:
malb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109966845 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
109966845 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
109966845
NCBI-ProteinID:
XP_020467682
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQIESQLDSQVNG
PDEGLLNNGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLSETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSLWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVDDATIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICSTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQLDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRARYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTVMYDAREALIPGSAYDRSNAGIYFCLFMIRNMYFQTHDQIGMIGAG
PAHMAAMNIPIPFNLVMPPMPPPSYLAQTNGPAAGRGAMKGKPGRGGRQRVRGSGNQGAS
QGNGPNSQVSQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcacctttctggacaccgaggaa
acggagttgctcggtgcggatacccagggctccgagtacgacttcactgacttcaccctc
cctagccagacgcaaactcaaggccagatcgaaagccagctggacagccaggtaaatggt
cctgatgagggtcttctcaacaatggagtggatgactccgtggccaaagccagccagcta
ttagccgagctcaactttgaggaggatgaagaagacacgtactacaccaaagacctacct
gtgcacgcatgcagctactgtggtatccatgatccagcgtgtgtggtgtactgcaatacc
agcaaaaagtggttttgcaatggacgtggcaacacttcaggcagccacattgtgaaccac
ttggtgagagccaaatgcaaagaagtgacactgcataaagatgggccgctgagtgagacg
gtgctggaatgctacaactgtggctgtcggaatgtcttcctcctgggcttcattccggcc
aaggccgattctgtggtggtgctactctgcagacagccatgtgccagccagagtagttta
aaagacatcaactgggacagctcactgtggcaaccactgatccaagaccgctgctttctg
tcctggctggtgaagatcccatcagagcaggaacaacttagagcccgtcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggacaatcccactgccacattggaagac
ctggagaaacccggtgtggatgaggaaccccagcatgtgctgctgcgctatgaggatgcc
taccagtaccaaaatatctttggccctttggtcaaactggaggctgactacgacaagaag
cttaaggagtcccagacccaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgaggctgatgcaa
ggtgacgagatctgtcttcggtataagggagacctggctccgttgtggaaaggcattggc
catgtcatcaaagttcctgataactatggggatgaaattgccattgagctgcgtagcagt
gttggagcacctgtggaaatcccccacaacttccaggtggactttgtgtggaagtccact
tcttttgacaggatgcagagcgccctgaagacgtttgctgtggatgagacctcagtgtct
ggctacatttaccacaaactgctggggcacgaggtggatgatgccaccataaagtgccag
ttgccaaagcgtttcactgcccagggcctgcctgacctaaatcattcacaggtgtatgct
gtgaagacggtgctacagagacctctcagtctgattcagggtcccccaggcactgggaag
accgtcacctctgccaccattgtttaccacctgtcccgacagggcaacggaccagttctg
gtgtgcgctcccagtaacattgctgtggaccagttgactgagaagattgacaaaactggg
ctgaaggttgtcaggctgtgtgccaagagccgggaggccatcgagtcaccagtgtctttt
ctggctctgcacaaccagatcagcaacatggacagtatgccagagcttcagaaactacag
cagctgaaggatgagactggtgaactgtcatctgctgatgagaagcgctacagggctctg
aaacgcacagctgagagggagctgcttatgaatgctgatgtgatctgcagcacctgtgtt
ggggctggtgaccctcgtctggccaagatgcagtttcggtccatcctaattgatgagagc
acccaggccactgagcctgagtgtatggtgcctgtggtgttaggagccaagcagctcatt
ctggtgggtgaccactgccaattaggtcctgtggtgatgtgtaagaaagcggccaaggca
ggcttgtcccagtccctgtttgaacgcttggtagttttggggatccggccaatccgcctg
caggtccagtatcgcatgcacccggctctcagtgccttcccctccaacatcttctatgag
ggctccctgcagaatggcgtcactgcagctgaccgcatcaagaaaggctttgacttccaa
tggccacagctggacaagcccatgttcttctatgtgactcagggccaggaggagattgcc
agttctggaacctcctatctcaacaggacggaggcttccaacgtagagaagatcaccacc
aggctgctgaaggctggagccaaacccgaccagatcggtatcatcaccccatacgagggt
cagcgctcctacctggtccagtacatgcagttcagtggctccctgcacaccaaactttat
cagcaagtggaaattgccagtgtggatgccttccagggcagagagaaggacttcatcatc
ctgtcttgtgtccgtgcgaatgagcatcagggcatcggcttcttaaatgatcctcgtcgt
ctcaatgtggcgctgaccagagccaggtatggtgtgatcattgtggggaaccctaaggcc
ctctctaaacaacccctgtggaacaacctgcttaacaactacaaggagcagaaggtcctg
gtggaagggccccttaacaacctgagggagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaaccctgggggacgtttcatgagcacagtgatgtacgatgctcgt
gaggccctcatccctggctctgcctatgaccgcagcaatgcaggtatttatttttgttta
tttatgatcaggaacatgtactttcaaactcatgaccagatcgggatgattggggcaggt
cctgctcacatggctgctatgaatatccccataccattcaacctggtgatgccaccaatg
cctccacccagctacctggctcagaccaatgggccagccgcaggtcgtggagccatgaag
ggtaagcctggccgtggcgggcgccagagggtacgtggctcaggaaaccaaggtgccagt
cagggtaatggaccaaacagtcaggttagccaggatggggcctcccagtccttctcccag
gggccattgacgcagggctacatctcaatgagccaaccctctcagatgagccagcctggc
ctctcccagccagagctttcccaggacagctacctgggtgacgagttcaagtcccaaatc
gatgtggctttgtcccaggactcaacctaccagggtgaacgtgcataccagcatggcgga
gtgaccggactgtcacagtactaa
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integrated database retrieval system
