Monopterus albus (swamp eel): 109969255
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Entry
109969255 CDS
T05607
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
malb
Monopterus albus (swamp eel)
Pathway
malb03013
Nucleocytoplasmic transport
malb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109969255
03015 mRNA surveillance pathway
109969255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
malb03019
]
109969255
Enzymes [BR:
malb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109969255
5.6.2.5 RNA 5'-3' helicase
109969255
Messenger RNA biogenesis [BR:
malb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109969255
mRNA cycle factors
Common to processing body (P body) and stress granule
109969255
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
109969255
NCBI-ProteinID:
XP_020471638
LinkDB
All DBs
Position
Unknown
AA seq
1109 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGVGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGFDFQWPQPDKPMF
FYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM
QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR
YGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGG
RFMSTAMYDAREALIPGSVYDRSSNGRASNMYFQTHDQIGMIGTGSSPMTSMNIPIPFNL
VMPPVPPPGYMGQVNGPTAGRGGGMKGKAGSGGGGGARGGRQRNRGNTGNHGGGNGGGDR
GHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFKS
QIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcacagaccctaacgttcctggataccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgattttaccctg
ccgagccagacgcagacccaaggccagacgcagagccaactagacaaccaggttaatggt
cctgacggggtactgcagaatggagacgacccggtggtaaaagccagtcagttgctggca
gagttgaactttgaggaagatgaggaagacacctactataccaaggaccttcctgtacat
gcctgcagttactgtgggattcatgatccagcctgcgtggtctactgcaacaccagcaaa
aagtggttttgcaatggtcgtggaaacacatctggcagccacattgtgaaccacctggta
agagcaaagtccaaggaggtgaccctgcataaagatggccctctgggggaaacagtgctg
gagtgctacaactgtggctgccgcaatgtcttcctgctgggcttcatccccgccaaggca
gactcggtggtggtgttactgtgccggcagccatgtgccagccagagcagcctgaaagac
atcaactgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctgg
ctggtcaaaatcccctcagagcaggagcagctcagggcccgtcagatcaccgcccagcag
atcaacaagctggaggaactctggaaggaaaacccaactgcgactctggaggatctggag
aagcctggtgtggacgaggagccccaacatgtcctgcttcgctatgaggatgcttatcag
taccagaacatctttggccctcttgtgaagctggaggccgactatgataagaaactcaaa
gagtcccagactcaagacaacattaccgttagatgggacttgggactgaataaaaagagg
attgcatatttcacccttcccaaaacagattcagatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggcccctccatggaaaggcgttgggcatgtcatc
aaagtccccgataactatggtgatgagatcgccatagagttgaggagcagtgctggggcg
ccagtggagatcccacacaacttccaggttgactttgtgtggaagtccacgtcctttgac
agaatgcagagtgccctcaagacatttgctgtggatgagacttcagtgtctggttacatc
taccacaaactgctgggacatgaggtcgaggatgtggtcatcaagtgccagctgcccaaa
cgcttcaccgctcagggtcttcctgatctaaaccactcccaggtgtatgctgtgaagaca
gtgctgcagcgtcctctcagtctgatccagggtcctcctggcacagggaagacggtaacc
tccgccaccatcgtctaccacctggctagacagggcaatgggccagtacttgtgtgtgct
cccagtaacattgccgttgaccagctgacagagaagatccaccaaacaggactcaaagtg
gtgaggctgtgtgccaagagcagggaggccatcgactcacctgtttctttcttggctctg
cacaaccagacccgtaatatggacagtatgccagagctccagaagctccaacagctgaag
gacgagacaggagagctgtcctcctcagacgagaagcgctaccgagctctgagacgcact
gctgagagggagctacttatgaatgctgatgtgatctgctgtacctgtgtcggagcagga
gatcctcgtctggccaagatgcagttccggtcaatcttgattgatgagagcactcaggcc
actgaaccagaatgtatggtgcctgtcgtcctgggggccaagcagttaattctggtgggt
gatcattgccagctggggcctgtggtgatgtgtaaaaaggcagctaaagcaggtctgtct
cagtctctctttgagcgtctggtcgttctggggatccgaccaatccgtctgcaggtccag
taccgcatgcacccagccctcagcgccttcccatccaacatcttctatgagggctctctg
cagaatggagtcactgctggctttgacttccaatggccacaacctgacaagccaatgttc
ttctacgttacacaaggtcaagaggaaattgccagctctggaacgtcctatctcaacagg
accgaggcagccaatgtggagaaaataactacaaagttgctgaaggctggagctaaacct
gatcagattggcatcattaccccctacgagggacagaggtcctacctggtccagtatatg
cagttcagtggctccctccataccaagctctaccaggaggtggagatagccagcgtggat
gcctttcagggcagagagaaagacttcatcatcctgtcctgtgtgcgggccaatgagcac
cagggcattggcttcctcaatgatccccgacgtctaaacgtggcactcaccagggccagg
tatggtgtgattattgtgggaaaccccaaggccctgtccaagcagcccctgtggaaccac
ctgctcaactactacaaggagcagaaggtcctggtcgaaggtcccctcaacaacctgagg
gagagccttatgcaattcagcaagccccgcaagttggttaacaccataaacccagggggt
agattcatgagcacagcaatgtatgacgccagggaggcccttattcctggatctgtttat
gaccgcagcagcaatgggcgtgcatccaatatgtatttccagacccatgatcagattggt
atgattggcacaggctccagtcccatgacctccatgaacatccccatcccattcaacctt
gtgatgccacccgtacctccccctgggtacatgggacaggtgaatgggcccacagcaggt
cgtggtggaggtatgaagggcaaggcaggcagcggagggggcggcggggcccgaggtggc
cgtcaaaggaaccgtggcaacacggggaaccatggtggagggaatggaggaggagatcgt
ggacatggaggacacatgagcggcagccaggccagccaggacctgggctcccagcccttc
tctcaggggcctctgacacagggctacatcaacatgagccaaccgtcgcagatgagtcag
ccggggctctcccagcctgaactttcccaggacagttacctaggagatgagttcaagtcc
cagattgatgtggccttgtcccaggactccacctaccagggggagcgggcctaccaacat
ggtggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
