Pseudoduganella albidiflava: EYF70_15740
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Entry
EYF70_15740 CDS
T05903
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mali
Pseudoduganella albidiflava
Pathway
mali03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EYF70_15740 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mali03400
]
EYF70_15740 (ligD)
Enzymes [BR:
mali01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EYF70_15740 (ligD)
DNA repair and recombination proteins [BR:
mali03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EYF70_15740 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QBI05071
UniProt:
A0A411X7R2
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All DBs
Position
complement(3821507..3824209)
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AA seq
900 aa
AA seq
DB search
MAMTDALKLYKAKRNFSITPEPAEGGEEGQEALTFVIQKHWATRLHYDFRLELDGTMKSW
AVPKGPSYDSHDKRMAVHVEDHPISYNDFEGVIPEKQYGAGKVIIWDKGTWHPIGDPRKG
YRDGNLKFELRGHKMHGRWALVRMRRSGEKQEPWLLIKENDEHVRPAGEFSVIDEMPDSV
KALGMPTAERLTPEAEEAESTAEEHQGKPARKRAAGEKGKATKTAATKAAAKKAPAKTKA
KAAAKAADPLATVQLPATLSPELATLVDAPPADPENWIFELKFDGYRLLARVEGKSIELW
TRNGNNWTHKLEPLRATLEKMRLPDGWYDGEIVVHDTNGRPNFGLLQQAFDGEKTRNIVY
FIFDAPYLDGHDLRDVPLAQRRELLQTVLGDAQGQVRFSAELAAPPEEIVAAACRMGLEG
IIGKRRDALYTSRRSGDWIKLKCAQRQEFVIGGYTDPKGSRVGIGSLLLGYYDDAGKLHY
AGNVGAGFNDTSLRDIIAKLKKVASDTNPFAPTKAIEKRAHWVKPTLVAEVTFGEWTGSG
SIRHSVFHGLRTDKKAASIRREQAVHVEDVMQTQAESKSAGRKTSAKSGARTKADPVSES
DVDSKLPATLKVTNADRLIDPVSGMTKIGLVRYYALVSELMLEHLKGRPLALVRAPAGVG
GELFFQKHSEVGKLPGVKQLPQELDPDHPTMLEVPNVQGLLSCAQWNVVEFHTQNAFAKT
YEKPNRMVFDLDPGQGVSWQQIQEAAQLMRAFLEQLGLPAFLKTSGGKGLHVVVPLKPQH
GWDAVKGFSSFIVEHMSRTLPDRFAFKSGPKNRVGKIFIDYLRNGRGATTAAAWSARARP
GMGISVPVAWSELDHLKSGDQWTVATVHTRLDHGNEPWADYAKSAVTLTKAMKQMGYKPA
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atcgccatgaccgacgccctcaaactctacaaggccaagcgcaacttctcgatcacgccg
gaacccgcggaaggcggcgaggaaggacaggaagcgctgacgttcgtgatccagaagcac
tgggccacgcggctgcactacgatttccgcctcgaactcgacggcacgatgaagagctgg
gctgtgccgaaaggccccagctacgacagccacgacaagcgcatggccgtgcacgtggaa
gaccatccgatctcgtacaacgatttcgaaggggtgatcccggagaagcagtacggcgcg
ggcaaggtgatcatctgggacaagggcacctggcatcccatcggcgatccccgcaagggc
taccgcgacggcaacctgaagttcgaactgcgcggccacaagatgcatggccgctgggcg
ctggtgcgcatgcggcgctccggcgaaaagcaggaaccgtggctgctcatcaaggaaaac
gacgaacacgtgcggccggccggcgaattctccgtcatcgatgaaatgcccgacagcgtg
aaggcgctcggcatgcccacggcggagcgcctgacgccggaagcggaagaagccgagagt
accgccgaggagcaccagggcaagcctgcgcgcaagcgcgcggccggggagaagggaaaa
gcgacgaagaccgcagcgacgaaggccgcagcgaaaaaggcgccggccaagaccaaggca
aaggctgccgcgaaggccgccgatccgctggcgacggtgcaactgccggccaccctgtcg
cccgagctggccacgctggtcgacgccccgcccgccgacccggaaaactggatcttcgaa
ctgaagttcgacggctatcggctgctggcccgcgtcgagggcaagtcgatcgaactgtgg
acccgcaacggcaacaactggacgcacaagctggaaccgctgcgcgccacgctggaaaaa
atgcggctgcccgatggctggtacgacggcgagatcgtggtgcacgataccaatggccgg
ccgaatttcggcctgctgcagcaggccttcgatggcgagaagaccaggaacatcgtgtac
ttcatcttcgatgcgccctacctggatggccacgacctgcgcgacgtgccgctggcccag
cgccgcgagctgctgcagacggtgctcggcgatgcccagggccaggtgcgcttctccgcc
gaactggccgcgccgcccgaggaaatcgtcgccgcggcatgccggatgggcctggagggc
atcatcggcaagcggcgcgacgcgctgtacacgtcgcgccgctcgggcgactggatcaag
ctgaagtgcgcgcagcggcaggaattcgtgatcggcggctataccgatccgaaaggctcg
cgggtgggcatcggctcgctgctgctgggctactacgacgacgccggcaagctgcactat
gccggcaatgtcggcgccggcttcaacgacacctcgctgcgcgacatcatcgccaaactg
aagaaggtggccagcgataccaatcccttcgcgcccaccaaggcgatcgaaaagcgggcg
cactgggtgaagcccaccctggtggccgaagtgacgttcggcgaatggaccggcagcggc
tcgattcgccattccgtattccatggcctgcgcacggacaagaaggcggcgagcattcgt
cgcgagcaggccgtccacgtggaggatgtgatgcaaacccaagcagagagcaagagcgcc
ggaaggaaaaccagtgcaaagtccggtgccaggaccaaggccgatccggtaagcgaatcg
gacgtggacagcaagctgcccgccacgttgaaggtgaccaacgccgaccggctgatcgac
ccggtcagcggcatgaccaagatcggcctggtgcgctactacgcgctggtctcggaactg
atgctggaacacctgaagggccgcccgctggcgctggtgcgcgccccggccggcgtcggc
ggcgagctgttcttccagaagcattccgaggtcggcaagctgcccggcgtgaagcagttg
ccgcaggagctggacccggatcatccgacgatgctcgaagtgcccaacgtgcagggcctg
ctgtcgtgcgcgcagtggaacgtggtcgagttccacacccagaacgcgttcgcgaaaacc
tatgaaaaaccgaaccgcatggtgttcgacctcgaccccggccagggcgtgtcgtggcag
cagatccaggaagcggcgcagctgatgcgcgccttcctcgagcagctgggcttgccggcc
ttcctgaagaccagcggcggcaagggcctgcacgtggtcgtgccgctgaagccccagcac
ggctgggatgcggtgaagggcttttccagcttcatcgtcgagcacatgtcgcgcacgctg
ccggaccgtttcgccttcaagagcgggccgaagaaccgggtcggcaagatcttcatcgat
tacctgcgcaacggccgcggcgccaccacggccgccgcatggtcggcccgcgcgcggccc
ggcatgggcatctcggtgcccgtcgcctggagcgagctggatcacctgaaaagtggcgac
cagtggaccgtggccaccgtccacacccgcctcgaccacggcaacgagccgtgggccgac
tacgcgaagagtgccgtcacgctgaccaaggccatgaagcagatgggctacaagcccgcc
tga
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