KEGG   Pseudoduganella albidiflava: EYF70_15740
Entry
EYF70_15740       CDS       T05903                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mali  Pseudoduganella albidiflava
Pathway
mali03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mali00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EYF70_15740 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mali03400]
    EYF70_15740 (ligD)
Enzymes [BR:mali01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EYF70_15740 (ligD)
DNA repair and recombination proteins [BR:mali03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EYF70_15740 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QBI05071
UniProt: A0A411X7R2
LinkDB
Position
complement(3821507..3824209)
AA seq 900 aa
MAMTDALKLYKAKRNFSITPEPAEGGEEGQEALTFVIQKHWATRLHYDFRLELDGTMKSW
AVPKGPSYDSHDKRMAVHVEDHPISYNDFEGVIPEKQYGAGKVIIWDKGTWHPIGDPRKG
YRDGNLKFELRGHKMHGRWALVRMRRSGEKQEPWLLIKENDEHVRPAGEFSVIDEMPDSV
KALGMPTAERLTPEAEEAESTAEEHQGKPARKRAAGEKGKATKTAATKAAAKKAPAKTKA
KAAAKAADPLATVQLPATLSPELATLVDAPPADPENWIFELKFDGYRLLARVEGKSIELW
TRNGNNWTHKLEPLRATLEKMRLPDGWYDGEIVVHDTNGRPNFGLLQQAFDGEKTRNIVY
FIFDAPYLDGHDLRDVPLAQRRELLQTVLGDAQGQVRFSAELAAPPEEIVAAACRMGLEG
IIGKRRDALYTSRRSGDWIKLKCAQRQEFVIGGYTDPKGSRVGIGSLLLGYYDDAGKLHY
AGNVGAGFNDTSLRDIIAKLKKVASDTNPFAPTKAIEKRAHWVKPTLVAEVTFGEWTGSG
SIRHSVFHGLRTDKKAASIRREQAVHVEDVMQTQAESKSAGRKTSAKSGARTKADPVSES
DVDSKLPATLKVTNADRLIDPVSGMTKIGLVRYYALVSELMLEHLKGRPLALVRAPAGVG
GELFFQKHSEVGKLPGVKQLPQELDPDHPTMLEVPNVQGLLSCAQWNVVEFHTQNAFAKT
YEKPNRMVFDLDPGQGVSWQQIQEAAQLMRAFLEQLGLPAFLKTSGGKGLHVVVPLKPQH
GWDAVKGFSSFIVEHMSRTLPDRFAFKSGPKNRVGKIFIDYLRNGRGATTAAAWSARARP
GMGISVPVAWSELDHLKSGDQWTVATVHTRLDHGNEPWADYAKSAVTLTKAMKQMGYKPA
NT seq 2703 nt   +upstreamnt  +downstreamnt
atcgccatgaccgacgccctcaaactctacaaggccaagcgcaacttctcgatcacgccg
gaacccgcggaaggcggcgaggaaggacaggaagcgctgacgttcgtgatccagaagcac
tgggccacgcggctgcactacgatttccgcctcgaactcgacggcacgatgaagagctgg
gctgtgccgaaaggccccagctacgacagccacgacaagcgcatggccgtgcacgtggaa
gaccatccgatctcgtacaacgatttcgaaggggtgatcccggagaagcagtacggcgcg
ggcaaggtgatcatctgggacaagggcacctggcatcccatcggcgatccccgcaagggc
taccgcgacggcaacctgaagttcgaactgcgcggccacaagatgcatggccgctgggcg
ctggtgcgcatgcggcgctccggcgaaaagcaggaaccgtggctgctcatcaaggaaaac
gacgaacacgtgcggccggccggcgaattctccgtcatcgatgaaatgcccgacagcgtg
aaggcgctcggcatgcccacggcggagcgcctgacgccggaagcggaagaagccgagagt
accgccgaggagcaccagggcaagcctgcgcgcaagcgcgcggccggggagaagggaaaa
gcgacgaagaccgcagcgacgaaggccgcagcgaaaaaggcgccggccaagaccaaggca
aaggctgccgcgaaggccgccgatccgctggcgacggtgcaactgccggccaccctgtcg
cccgagctggccacgctggtcgacgccccgcccgccgacccggaaaactggatcttcgaa
ctgaagttcgacggctatcggctgctggcccgcgtcgagggcaagtcgatcgaactgtgg
acccgcaacggcaacaactggacgcacaagctggaaccgctgcgcgccacgctggaaaaa
atgcggctgcccgatggctggtacgacggcgagatcgtggtgcacgataccaatggccgg
ccgaatttcggcctgctgcagcaggccttcgatggcgagaagaccaggaacatcgtgtac
ttcatcttcgatgcgccctacctggatggccacgacctgcgcgacgtgccgctggcccag
cgccgcgagctgctgcagacggtgctcggcgatgcccagggccaggtgcgcttctccgcc
gaactggccgcgccgcccgaggaaatcgtcgccgcggcatgccggatgggcctggagggc
atcatcggcaagcggcgcgacgcgctgtacacgtcgcgccgctcgggcgactggatcaag
ctgaagtgcgcgcagcggcaggaattcgtgatcggcggctataccgatccgaaaggctcg
cgggtgggcatcggctcgctgctgctgggctactacgacgacgccggcaagctgcactat
gccggcaatgtcggcgccggcttcaacgacacctcgctgcgcgacatcatcgccaaactg
aagaaggtggccagcgataccaatcccttcgcgcccaccaaggcgatcgaaaagcgggcg
cactgggtgaagcccaccctggtggccgaagtgacgttcggcgaatggaccggcagcggc
tcgattcgccattccgtattccatggcctgcgcacggacaagaaggcggcgagcattcgt
cgcgagcaggccgtccacgtggaggatgtgatgcaaacccaagcagagagcaagagcgcc
ggaaggaaaaccagtgcaaagtccggtgccaggaccaaggccgatccggtaagcgaatcg
gacgtggacagcaagctgcccgccacgttgaaggtgaccaacgccgaccggctgatcgac
ccggtcagcggcatgaccaagatcggcctggtgcgctactacgcgctggtctcggaactg
atgctggaacacctgaagggccgcccgctggcgctggtgcgcgccccggccggcgtcggc
ggcgagctgttcttccagaagcattccgaggtcggcaagctgcccggcgtgaagcagttg
ccgcaggagctggacccggatcatccgacgatgctcgaagtgcccaacgtgcagggcctg
ctgtcgtgcgcgcagtggaacgtggtcgagttccacacccagaacgcgttcgcgaaaacc
tatgaaaaaccgaaccgcatggtgttcgacctcgaccccggccagggcgtgtcgtggcag
cagatccaggaagcggcgcagctgatgcgcgccttcctcgagcagctgggcttgccggcc
ttcctgaagaccagcggcggcaagggcctgcacgtggtcgtgccgctgaagccccagcac
ggctgggatgcggtgaagggcttttccagcttcatcgtcgagcacatgtcgcgcacgctg
ccggaccgtttcgccttcaagagcgggccgaagaaccgggtcggcaagatcttcatcgat
tacctgcgcaacggccgcggcgccaccacggccgccgcatggtcggcccgcgcgcggccc
ggcatgggcatctcggtgcccgtcgcctggagcgagctggatcacctgaaaagtggcgac
cagtggaccgtggccaccgtccacacccgcctcgaccacggcaacgagccgtgggccgac
tacgcgaagagtgccgtcacgctgaccaaggccatgaagcagatgggctacaagcccgcc
tga

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