Microcella alkaliphila: MalAC0309_0834
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Entry
MalAC0309_0834 CDS
T05359
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
malk
Microcella alkaliphila
Pathway
malk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
malk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MalAC0309_0834 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
malk03400
]
MalAC0309_0834 (mfd)
Enzymes [BR:
malk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MalAC0309_0834 (mfd)
DNA repair and recombination proteins [BR:
malk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MalAC0309_0834 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAU31701
UniProt:
A0A0U5BJF4
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All DBs
Position
842658..846245
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AA seq
1195 aa
AA seq
DB search
MRDVTLERLIPVLQRAQTFSDALEYAGRSAEFSTVEGLRLPLIAGLLERRDGPQCLLAIT
ATGREAEAVREAWECLDPDATVIDLPAWETLPHERLSPSAETVGRRIRTLRALAEWADAP
TGTIVVVASVRAALQPLPAGLTDIEPVLLELNGRGSELSDVTRRLIDLAYSRVDMVTRRG
EFAVRGGILDVFPAVAEHPVRVEFFGDEVDQIREFSVADQRSLPDTGITRVELPPTRELL
LTDGVRQRAREMLHEFPSLSSILEKVAEGIPVEGMESLAPALVDRLVPLTTYLPENAAVV
VLGPERVATRAANLVETNREFLSAAWHAATAGAESPIDLDAGDFLTVQALRESAGDRAWW
TVSQFDADEPGVVRVAADPPPSFAGKSGGAVDHVVDRLADGWCMIVAAVGPGLVERARDV
LSDAGAAARPVDALPETLEPGVAYLVRGSVEQGFELPDVKLGLFGETEFYGRSVGYDSRQ
PKKLASRRKNVVDPLQLKAGDFVVHNTHGIGKFIELVQREVSTGGGRNAQKSTREFLVIE
YAPSKRGYPGDKLYVPTDQLDLLTRYVGGEAPALSKMGGSDWAAAKGRARKAVRDIAVEL
VKLYSARMSSKGFAFPPDTPWQRELEEAFPYAETPDQLTTIDEVKRDMESPIPMDRLLAG
DVGYGKTEVAVRAAFKAVQGGKQVAVIVPTTLLVKQHMETFADRFAGFPVHLRALSRFQS
DREAKETIDGLARGTVDVVIGTHRILSQGIAFKDLGLVIIDEEQRFGVEHKDALKKLKTN
VDVLAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPYSDKQVAAAIHRELLR
EGQIFYVHNRVSSINRVAANLAELVPDARVAIAHGQMSESALEQVMVDFWERKFDVLVST
TIIETGLDVANANTLIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDETKPLTETAHD
RLQTLAANSDLGGGMAIAMKDLEIRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAVSVFRG
DAAEEPTELCLELPVDARIPEEFIESERLRLEAYQKLSTAAAPASDDEALGQVREELADR
YGDLPAPVLALLRVSQLRRTAQKAGLSDVVVMGSNLRLVGRELPDSKQLRLQRMYPGSKW
WGQTRTAQVPLPKDASDDDLISWVGQVLENLYDAGASSDARGASDASASASPSAG
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcgacgtgactctcgagcggttaattccggtgcttcagcgcgcccagacgttttct
gacgccctcgagtacgcggggcgctcggccgagttctccaccgtcgaggggcttcgcctc
ccgctcattgcggggcttctcgagcggcgcgacggcccgcagtgcctcctcgccatcacc
gcgaccggccgcgaggcggaggcggtgcgcgaagcgtgggagtgcctcgaccccgacgcc
accgtgatcgacctgcccgcgtgggagaccctgccgcacgagcgcctcagcccgagcgcc
gagaccgtcggccgacgcatccgcacgctgcgcgcgcttgccgaatgggcggatgctccc
accggcacaatcgtggtcgtcgcctctgtgcgcgccgccctgcagccccttcccgcgggt
ctcaccgacatcgagccggtgctgctcgagctgaacggcaggggttcggagctctccgac
gtcacccgccgactcatcgacctcgcttattcccgcgtcgacatggtgacgcgccgcggc
gagttcgctgtgcgcggcggaatcctggatgtatttccggccgtagccgagcatcccgtt
cgcgtcgagttcttcggcgacgaggttgatcagattcgcgaattctcggtcgccgaccag
cggtcgctgcccgacacgggaatcacgcgcgtcgagttgccgccgacccgcgagctgctg
ctcaccgacggcgttcggcaacgcgcgcgcgagatgctgcacgagttccccagcctgtcg
tcgatcctcgagaaggtggccgaaggcattccggtcgagggcatggagagcctcgcaccg
gcgctcgtcgaccggctcgtgccgctgacgacctacctgcccgagaacgcggccgtcgtc
gtgctcggccccgaacgcgtggcgacccgcgccgcgaatctggtcgaaacgaaccgcgag
tttctgagcgccgcgtggcatgccgccacggccggtgccgagtcgccgatcgacctcgac
gccggcgacttcctgaccgtgcaggccctgcgcgagtcggccggggaccgcgcctggtgg
acggtcagccagttcgacgccgacgagcccggtgtcgtgcgcgtcgccgccgacccgccg
ccgtcgttcgcgggcaagagcgggggagcggttgaccacgtcgtcgatcgcctggccgac
ggttggtgcatgatcgtcgcggcggtcggccccggactcgtcgaacgcgcccgcgacgtg
ctctcggacgcgggcgccgcagcgcgtcccgttgacgcgctgcccgagacgctcgagccg
ggcgtcgcctacctcgtgcgcggcagcgtcgagcagggcttcgagctgcccgatgtgaag
ctcgggctcttcggcgagaccgagttctacggccgcagcgtcggctacgactcgcgccag
ccgaagaagctcgcgagccgccgcaagaacgtcgtcgacccgctgcaactgaaggcgggc
gacttcgtcgtgcacaacacccacggcatcggcaagttcatcgaactggtgcagcgcgag
gtgtccactggcggcggccgcaacgcccagaagtcgacgcgcgagttcctcgtgatcgag
tacgcgccgagcaagcgcggctaccccggcgacaagctgtacgtgccgaccgaccagctc
gacctgctcacccgctacgtcggcggcgaagcgccggcgctcagcaagatgggcggcagc
gactgggcggccgcgaagggtcgcgcccgcaaggccgtgcgcgacatcgccgtcgagctc
gtgaagctgtactccgcgcgcatgtcgagcaagggattcgcgttccctcctgacaccccg
tggcagcgcgagctggaggaggcgttcccgtacgccgagacgcccgaccagttgacgacg
atcgacgaggtcaagcgcgacatggagtcgccgatccccatggaccgactgctcgccggc
gacgtcgggtacggcaagaccgaggtcgccgtgcgcgccgcgttcaaggcggtgcagggc
ggcaagcaggtcgccgtcatcgtgccgaccaccctgctcgtcaagcagcacatggagacc
ttcgccgaccgattcgccggcttccccgtgcacctgcgcgcgctcagtcgattccagtcc
gaccgggaggcgaaggagacgatcgacgggctcgcgcgcggcacggtcgacgtcgtgatc
ggaacccaccgcatcctgagccagggcatcgccttcaaagacctgggcctcgtcatcatc
gacgaggagcagcgtttcggcgtcgagcacaaggacgcgctcaagaagctgaagacgaac
gtcgacgtgctcgcgatgtcggccacgcccatcccgcgcaccctcgagatggcggtgacg
ggcatccgcgaaatgtcgacgctcgcaaccccgcccgaggaccggcacccgatcctcacc
ttcgtggggccctacagcgacaagcaggtcgcggcggcgatccaccgcgagctcttgcgt
gagggccagatcttctacgtgcacaaccgcgtgtcgagcatcaaccgggtcgccgcgaac
ctcgccgagctggtcccggatgcacgcgtcgcgatcgcgcacggacagatgagcgagagc
gccctcgagcaggtcatggtcgacttctgggagcgcaaattcgacgtgctcgtctcgacg
accatcatcgagaccggcctggacgtcgccaacgcgaatacgctgatcatcgaccgcgcc
gacaagtacgggctgtcgcagctgcaccagctgcgcggacgcgtcggtcgcggacgtgag
cgggcctacgcctacttcctctacgacgagacgaagccgctgaccgagaccgcccacgac
cggctgcagactctggcggccaacagcgacctgggcggcggcatggccatcgcgatgaag
gacctcgagatccgcggcgcgggcaacctgctgggtgccgagcaggcgggacacatcgcc
ggcgtcggcttcgacctgtacctgcgcatgatcggcgaagccgtgagcgtcttccgtggc
gacgcggcggaagaaccgaccgagctgtgcctcgaattgcccgtggatgcgcgcatcccc
gaagaattcatcgagtcggagcggctgcgcctcgaggcgtaccagaagctgtcgacggcg
gccgcgcccgcgagtgacgacgaagccctcggccaggtgcgcgaggagctcgccgaccgc
tatggcgaccttcccgcgcccgtgctcgccctgctgcgggtgtcgcagctgcggcgaacc
gcgcagaaggcgggcctgtcggacgtcgtcgtgatgggctcgaacctgcgccttgtcggg
cgcgagcttcccgactcgaagcagctgcgcctgcagcgtatgtacccggggtcgaagtgg
tggggtcagacgcgaaccgcgcaggttccgctgccgaaggatgcgtctgacgacgacctg
atctcgtgggtggggcaggtgctcgagaacctttacgacgcgggggcgtcgtcggatgct
cgtggtgcgtcggacgcgtcggcgtcggcgtcgccgtcggcgggctga
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