Marinobacter alkaliphilus: PBN92_04410
Help
Entry
PBN92_04410 CDS
T08753
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mall
Marinobacter alkaliphilus
Pathway
mall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBN92_04410 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mall03019
]
PBN92_04410 (rnr)
03016 Transfer RNA biogenesis [BR:
mall03016
]
PBN92_04410 (rnr)
Enzymes [BR:
mall01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PBN92_04410 (rnr)
Messenger RNA biogenesis [BR:
mall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PBN92_04410 (rnr)
Transfer RNA biogenesis [BR:
mall03016
]
Prokaryotic type
tRNA degradation factors
PBN92_04410 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
WBU42150
LinkDB
All DBs
Position
968927..971386
Genome browser
AA seq
819 aa
AA seq
DB search
MVSRKKEGRDPHAEREAQKYENPIQSREFILKHLKERGAPATHETLCQELGQTSEEGIEA
LRRRLIAMCRDGQLICNRRDAFLPIEEADLVTGKVTGHKDGFGFLIPDDGGSDLFLTARQ
MRQVFHGDRVAARVDRVDDRGRREGVIVEVLEHRTSQTVGRFFKESGIAFVVPENARINH
EILVPDEHAGKAVHGQYVVVEILRQPTVRTQPTGRIVEVLGEHMAPGMEIDVAIRSYEIP
HSWPTAVGEQAAGIPEEVAEKDKANRVDIRNMRLVTIDDETARDFDDAIYCEPRPRGGYR
LVVAIADVSHYVRPGSPLDEEAIRRGNSVYFPDHVVPMLPEKLSNGLCSLNPGVDRLCMV
ADMTISAAGNISGYTFYQAVMRSHARLTYNKVSAMLEHPDSEQGYKLSAHYADLLPHLHN
LYELYKLLRRARTERGAIDFETTETKIVFDAERKIEEIVPVHRNDAHKIVEECMLCANVA
TARLLKKHQVPALYRVHDGPSEERLNNLRLFLGELGLQLGGGDKPTSGDYQQLLAQVADR
PDANVIQMVMLRSLSQAVYSPEEAGHFGLGFPSYTHFTSPIRRYPDLIVHRAIKSRIHNP
EVQKDVVSPKSHDPELAVYPYDYARMEQLGEHCSMTERRADDATRDVMAWLKCEFLRDHV
GEEHDGVIAAVTPFGFFVELSDIYIEGLVHVSTLSGDYFHHDSAKHRLIGERTAVSFRLG
DEVRVRVVRVGLEDRKIDLELVSTPRKRTADRDALDMSKRETRGKGDRAGKGGKGGKRGK
SAKPESAKEKLAAEAARAASRKVGRGKPSAGGKARKPRK
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggtttccaggaagaaagaaggacgggatcctcacgctgaacgtgaggcccagaagtat
gaaaaccccatccagagccgggagtttattctcaagcacctgaaagagcgcggtgcgccg
gccactcatgaaacgttgtgccaggaactggggcaaacgtccgaggaaggtatcgaggcg
ttgcggcgacggctgattgccatgtgccgtgatggccagttgatctgtaaccgccgggat
gcgttcctgcccattgaagaggcggatctggtcacgggtaaggtgactgggcacaaagat
ggcttcgggttcctgattcccgatgacggcggctcagacctgttcctcaccgcgcgccag
atgcgccaggtgtttcatggtgaccgggtggctgcccgggtggaccgcgtggatgatcgt
ggtcgccgtgaaggggtaattgtcgaggttctggagcatcgcaccagtcagacggttggt
cgcttcttcaaggagagtggcattgcatttgtggtgcccgagaatgcccgcatcaatcac
gagattctggtgccggatgagcacgccggtaaggctgtgcacggccagtacgtggtggtg
gaaattctgcgccagcccaccgtgcgcacccagccaacagggcgtattgttgaagttctc
ggggagcatatggctccggggatggaaatcgacgtagcaatccgctcttacgagattcca
cacagctggccaaccgccgtgggcgagcaggcggcgggcattcccgaagaggttgccgag
aaagacaaggcgaaccgggtggatatccgcaacatgcggctggtcaccattgatgatgaa
accgcccgtgattttgatgacgccatctactgtgagccccggccccgtggcggttaccgg
ctggtcgtggccattgcggatgtgtcgcactatgtacgccctggctcgccgctggatgag
gaggcgattcgtcggggtaactcggtgtacttcccggaccacgtggtgcccatgctgccg
gagaagctctccaatggcttgtgttcactgaacccgggtgtcgatcggttgtgtatggtg
gcggatatgaccatcagcgcagccggtaatatcagtggctacaccttctaccaggcggtg
atgcgcagccatgcccggctgacctataacaaggtcagtgccatgctggagcacccggac
tcggagcaggggtacaagctgtcggcccattacgccgatttgctgccgcatctgcataac
ctctatgagctttataagctgctacgccgtgcccggactgagcgtggagcgattgatttc
gagaccaccgagaccaaaatcgtttttgatgccgagcgcaagattgaggaaatcgtgccg
gtgcaccgcaacgatgcccacaagatcgtagaagagtgcatgctctgcgccaacgtggcc
acggcccggctgttgaaaaagcatcaggtgccggcgctttaccgggtgcacgatgggccc
tctgaggagcgtctgaataacctgcgcttgttcctgggtgagctcggtttgcagttaggg
ggcggtgacaagccaacctccggggattaccagcagctgttggcccaggttgccgaccgt
ccggatgccaatgtgatccagatggtgatgctgcgttccctcagtcaggcggtatacagc
ccggaagaagctggccattttggtctgggctttcccagctatacccactttacctcgccc
attcgccggtatccggacctgatcgttcatcgggccatcaagtcccggattcacaatccg
gaagttcagaaagacgtggtgtcgccgaaaagccacgatccggagctggcggtgtatccc
tacgactatgcccgtatggagcagctgggtgagcattgctcgatgaccgagcgccgtgcc
gacgatgccacccgtgacgtgatggcctggctcaagtgcgagttcctgcgggatcacgtg
ggcgaggagcacgatggtgtgattgcggccgtcacacccttcggtttcttcgtcgaactg
tcggatatctatattgaggggctggtgcacgtgtccaccctcagtggcgattactttcac
cacgattccgccaagcaccgcctgatcggtgagcgcaccgcggtgagcttccggttaggg
gatgaggttcgcgtcagggttgttcgggtagggctggaagatcgcaagatcgatctggaa
ctggtcagtacgcccagaaagcggacagcagatcgtgacgccctggacatgtccaaacgc
gagacccgcggtaaaggtgatcgtgccggtaagggcggaaagggtggaaagcgcggtaaa
tctgccaagcctgagagtgccaaggagaagctggcagccgaggcggccagggcggcgtcc
cgaaaagttggcaggggtaagccctctgccggcggtaaagcccgtaagccccgaaagtaa
DBGET
integrated database retrieval system
