Marinobacter alkaliphilus: PBN92_07695
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Entry
PBN92_07695 CDS
T08753
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mall
Marinobacter alkaliphilus
Pathway
mall03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PBN92_07695 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mall03400
]
PBN92_07695 (mfd)
Enzymes [BR:
mall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PBN92_07695 (mfd)
DNA repair and recombination proteins [BR:
mall03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PBN92_07695 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WBU42765
LinkDB
All DBs
Position
complement(1690169..1693702)
Genome browser
AA seq
1177 aa
AA seq
DB search
MPQGSARAASPAPLIAPTLPDKSADHRKWGQLHGCSDALAICESAKLHKGLTLVVTRSTD
EAIRLEQAIRFFLNLPPEEDGATVTEDGLELLSLPDWETLPYDLFSPHQDITSRRIRTLH
RLPSTRHGVLVVPARTLMHRLAPPSYLQGNTLLLKVGQSLDIDSWRMQLEAAGYHHAENV
YEHGEYAVRGAILDIYPMGSNLPYRIDLFDDEIETLRTFDPETQRSIDRIEQIELLPAHE
FPWHKEARSGFRNRWFEHFPHADKDAPVYQDVSNGITPPGIEYYLPLFFDQTATLFDYLP
ATTLVFTADGLNDAVAAFDAETRARHEDRRHDRLRPILPPAELFLLQDEVFGQIKRYPRI
TCTPDPMDGAGTANCGATPLPDVAMDGRAADPAGRLKRFIKEFPGRVLICAESSGRREAL
IENLRDHKLKPVTVSGWQDFSESDNAALAITIAPMEQGMVLPEQNLALITETALFGERVL
QRRRREKPTEVDDHGYRDLSELRIGSPVVHIDHGVGRYKGLETIDAGGQADEFLTLEYAG
GSKLYVPVSSLHLISRYAGTDEEHAPLHKLGTDRWSNAKQKALEKIRDTAAELLDVYARR
EARKGFQFEDPKEAYRAFAAGFPFEETPDQQVAIQSVFEDMTGERPMDRLVCGDVGFGKT
EVAMRAAFLATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVTVELLSRFRSGSQTTKA
MTAIEEGKADIVIGTHKLLQGDVKFKNLGLVIIDEEHRFGVQQKERLKSLRAEVDMLTLT
ATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQREEAMVKEAILREILRGGQVYFL
HNDVSTIEKTAEDLRRLIPEARVGVAHGQMRERQLEQIMSDFYHKRFNVLVCTTIVETGI
DIPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSISNDAKKRLDAIAE
AQDLGAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNAE
LPLSHGTEMNLRIPALIPDDYLPDVHNRLMLYKRIASVQTEDELKELQVEMIDRFGLLPE
PAKNLINQTRLRLKAEALGIGKVDAGKEWVRLEFGATTPVDPLVLVKKVQSAPDTYRLEG
ANSFRFRLNDDSTSGKLDAIAAMLTELTPGTKPAKAS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgccccaaggttccgcccgtgcggcctcacccgccccgttgattgccccgacgctgccg
gataaaagcgccgaccaccgcaaatggggccagcttcacggttgcagtgacgccctggcc
atctgcgagagcgccaagctgcacaaaggactgaccctggtggtcacccgaagcaccgat
gaggccatccgcctggaacaagccatccggtttttcctgaacctgccaccggaagaagac
ggcgccactgtgaccgaagacggccttgagctgttgtcgctgccggactgggaaaccctg
ccctacgacctgttttcaccccaccaggacattacttccaggcgtatccgcaccctgcac
cggttgccatccacacgccacggtgttctggtggtgcccgcccgcaccctgatgcatcgg
ctggcgccgccaagttacctacaaggcaacaccctgctattaaaagtaggccagagcctg
gatatcgacagctggcgcatgcaactggaggctgcgggatatcaccacgctgaaaatgtg
tatgagcacggcgaatacgcggtgcgcggggcgattctggacatctacccgatgggctcc
aacctgccctaccggattgacctgttcgacgacgaaatcgaaaccttgcgcacgtttgac
ccggaaacccagcgctccattgaccgaatcgaacagatcgaactgctgccagcccatgag
ttcccctggcacaaagaggctcgctccggcttccgcaaccgctggtttgaacatttcccc
catgccgacaaagatgcgccggtgtatcaggacgtcagtaatggcattaccccgccgggc
atcgaatattacctaccgctcttctttgaccagaccgccaccctgttcgattacctgccg
gccaccacactggtgtttaccgcagacggcctgaacgatgctgttgcggctttcgatgcg
gaaacccgcgccaggcacgaggaccgccggcacgaccggctgcgaccgattctgccgccg
gccgagcttttcctgctacaggacgaagtgtttggccagatcaagcgatacccgcgcatc
acctgcacccccgaccccatggacggcgccggtactgccaattgcggcgccacaccgtta
ccggacgtggccatggatggccgggccgcggacccggccgggcgactcaaacgctttatc
aaggaattcccgggccgcgtgctgatttgcgccgaatcttccggtcggcgcgaagccctg
atcgagaacctgcgggatcacaagctaaagcctgtcaccgtcagcggctggcaggatttt
agcgagagcgataatgctgccctggccatcaccattgcgccgatggaacagggaatggtg
ctaccggagcagaacctcgccctgattactgaaaccgccctgttcggcgaacgggttctg
cagcggcgccggcgtgaaaagcccacggaagtggacgaccacggctaccgggacctgtcc
gagctgcgtatcggctcgccggtggtgcatattgaccacggagttggccgttacaaaggc
ctggaaaccatcgacgccggtggccaggccgatgagttcctgaccctggaatacgccggt
ggctcgaaactctacgttcccgtttccagcctgcacctgatttcccgctacgccggcacc
gacgaagagcacgcgcccctgcacaagctcggcaccgaccgctggagtaatgccaaacaa
aaggccctggagaagatacgcgataccgccgccgagcttctggacgtttacgcccgccga
gaagcccgcaaaggcttccagtttgaagacccgaaagaggcctaccgtgctttcgccgcg
ggtttcccgttcgaggaaacaccggaccagcaggtggccattcagtcggtgttcgaagac
atgactggcgagcgccccatggaccgcctggtatgcggtgatgtgggcttcggcaaaacc
gaggtagccatgcgtgcggccttcctggccacctggtcaggcaagcaggtggccgtgctg
gtacccaccaccctgctggcccagcagcattacgaatccttccgggatcgtttttccgac
actccggtcaccgtggaactgctcagccggtttcgcagtggcagccagaccaccaaagcc
atgacagccatcgaagaaggcaaggcagacattgtgatcggcacccacaaattgctgcag
ggcgatgtgaagttcaagaatctgggtttggtcattatcgatgaggagcaccggttcggt
gttcagcagaaagaacggctgaaatccctgcgggcggaggtggacatgcttacgctgacc
gctacgccgatcccgagaaccctgaacatggccatggggcacctgcgggatctgtcgatc
attgccacgcccccggcccgccggctatcggtgaaaaccttcgtgcgccagcgtgaagag
gccatggtgaaagaagccatcctgcgggaaatcctgaggggcggtcaggtgtactttctg
cataacgatgtgtcgaccatcgagaaaaccgccgaagacctgcgccggctgatccccgag
gcccgagtgggcgtggcccacggccagatgcgggaacggcagctggaacagatcatgtca
gacttttaccacaagcgcttcaacgtgctggtgtgcaccaccattgtggaaaccggcatc
gacattcccagcgccaacaccatcatcatcgagagagccgacaagtttggcctggcccag
ctgcaccagttgcgcggccgggttggccggtcgcaccaccaggcctatgcctaccttttg
acgccaccgcccaagagcatctccaacgatgccaagaaacgcctggacgccatcgccgag
gctcaggatctgggcgccggcttcatgctggccacccacgacctggaaatccgcggcgcc
ggcgagttgctgggcgaggaacagagcgggcaaattgaaagtattggtttcaccctctac
atgcagttgctggatgaggcggtaaaagccattcgcgagggccgtaccccgaatgcggaa
ctgccgttgagccacggcaccgaaatgaatctgcgcatcccggcattgattcccgacgac
tacctgcccgatgtgcacaaccgcctgatgctgtacaagcgcattgccagcgtacagacc
gaagatgaattaaaagaacttcaggttgagatgatcgaccgcttcggattattaccggaa
ccggccaagaatctgatcaaccagactcggttgcgcctgaaggccgaggcgctgggcatc
gggaaagtggacgctggcaaggaatgggtgcgactggagttcggtgcaaccacaccggtg
gaccccctggtgctggttaaaaaagtgcaatccgcgccggacacctacaggctggaaggc
gccaacagcttccgcttccggctgaatgatgattcaaccagtggtaaactcgacgccatt
gcagccatgctcacggaattgacgccgggcaccaaaccagccaaggcgtcgtga
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