Marinobacter alkaliphilus: PBN92_12955
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Entry
PBN92_12955 CDS
T08753
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
mall
Marinobacter alkaliphilus
Pathway
mall03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PBN92_12955 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mall03400
]
PBN92_12955 (sbcB)
Enzymes [BR:
mall01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PBN92_12955 (sbcB)
DNA repair and recombination proteins [BR:
mall03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PBN92_12955 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PBN92_12955 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PBN92_12955 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WBU39997
LinkDB
All DBs
Position
complement(2861739..2863187)
Genome browser
AA seq
482 aa
AA seq
DB search
MIRSFYWHDYETFGVDPVHDRPSQFAGVRTDADLNVIEDPLVIFCKPTDDYLPSPEACLI
TGITPQKALEDGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAR
EWQNGNSRWDIIDMVRLTYALRPEGINWPKKEDGSPSFKLEELTVANGIAHEAAHDAMSD
VLASIAVAKLIKEKQPKLFDFVLNNKDKHSARQMLDTAAMKPVFHISAKYPATRGCCALV
APVAESLSNKNQVIVYDLREDPTELINATVEQIRERVFTSQAELGEGVSRFPLKGVQLNK
CPVLAPANMLSTLSPERLAELELDGDVLRANLAKLRQAPDLPGRIAQAFEQDFAGSDLTD
PDEQLYAGGFISKTDREKLNWLLTQPADTLGEQDVSFEDARLPDMLFRYRARNYPGTLSG
EDMERWEEFRSQRLMHPKKGWRSLEEYGRILQKLAADPELTPKNQQILEDLHLYGESLIP
YM
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
ttgatccgttctttctactggcacgattacgaaaccttcggcgtggacccggttcatgac
cgcccctcccagttcgccggcgtacgaaccgatgccgatctgaatgtgatcgaagatccg
ttggtgatcttctgcaagccgacagacgattacctgccttccccggaagcctgtttgatt
actggtattactccgcagaaagcgctggaagacggctttccggaagcggaattcatcgcc
cagatcaacgaagccttcagccagcccggcacctgcgccgtgggctacaacagcctgcgt
tttgatgacgaagtcacccgccacaccctgtaccgaaacctgcgcgatccttacgcccgg
gaatggcagaacggtaactcccgctgggacatcatcgacatggtgcgactgacctacgcc
ctgcgcccggaaggcatcaactggccgaagaaagaagacggcagccccagcttcaagctg
gaggaattgacggtggctaacggcattgcccacgaggctgcccacgatgcgatgtctgac
gtgctggccagcatcgccgtggccaagctgatcaaagagaagcagcccaagctgtttgat
ttcgttctgaacaacaaagacaagcactccgcccggcaaatgctggacaccgccgccatg
aaacccgtgttccatatttctgccaagtacccggccacccgtgggtgctgcgccctggtg
gcgccggtggcggaaagtctgagcaacaagaaccaggtgattgtgtacgacctgcgggaa
gaccccactgaactgatcaacgccaccgtggagcagattcgtgagcgggtatttacgtca
caggcagagctgggtgagggcgttagccgcttccccttgaaaggtgtgcaactgaacaag
tgcccggtgctggccccggccaacatgctgtcaacgctgtcgccggaacggctggcggaa
ctggagctggatggcgacgtgctgcgcgccaacctggccaaactgcggcaagcgccagac
ctgccaggccgcatcgctcaagccttcgagcaggatttcgccggcagcgacctgaccgac
ccggacgaacaactctacgccggtggcttcatcagcaaaaccgatcgggagaaactgaac
tggctgttaacccagccggcagataccttgggcgagcaagacgtgagcttcgaagacgca
cgcctgccagacatgctattccgctaccgcgcccgcaattaccccggcaccctgagcggc
gaagacatggagcgctgggaagaatttcgcagccaacgcctgatgcaccccaagaaaggc
tggcgctcactggaagagtacggccgcattctgcaaaagctcgccgccgaccccgagctc
acgcccaagaaccagcaaatcctcgaagacctccacctctacggcgaatccctcatcccc
tacatgtaa
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