Mycolicibacterium alvei: MALV_45830
Help
Entry
MALV_45830 CDS
T06961
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
malv
Mycolicibacterium alvei
Pathway
malv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
malv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MALV_45830 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
malv03400
]
MALV_45830 (ligD_2)
Enzymes [BR:
malv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MALV_45830 (ligD_2)
DNA repair and recombination proteins [BR:
malv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MALV_45830 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Thr_synth_N
Motif
Other DBs
NCBI-ProteinID:
BBX29458
UniProt:
A0A6N4UYI8
LinkDB
All DBs
Position
4752717..4754996
Genome browser
AA seq
759 aa
AA seq
DB search
MDGVTERYERVRLTNPDKVLYPATGTTKAEVFDYYLDIAEVMLPHLAGRPVTRKRWPNGV
AQTSFFEKQLASSAPSWLERGNIAHKSGTTTYPIINTREGLAWIAQQAALEVHVPQWRFS
ADGSQGPATRIVFDLDPGEGVTMPQLGEVAQAVRDLMDDIGLTTYPLTSGSKGLHLYVPL
AEPISSRGASVLAKRVAQQLEQSMPTLVTATMTRSVRAQKIFLDWSQNNGAKTTIAPYSL
RGREHPTVAAPRTWDEIADPDLRQLRFDEVLQRVYDDGDLLDGLDADAPRGDKLTTYRSM
RDAGKTPEPVPPDVPPTGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPETTAV
NHLAVHTEDHPIEYLTFHGTIPKGEYGAGDMVVWDTGTYEAEKFRVSDDPEARNGEVIFT
LSGGKIDGRYALIQTEGKNWLAHRMKDQKSATPEPKDFAPMLSTEGSVAKLTAGQWAFEG
KWDGYRLLVEADHGRLQLRSRSGRDVTAEYPQLEVLAADLADHHVVLDGEVVALDDSGVP
SFGAMQNRARSTRVEFWAFDILWLDGRSLLRAKYSDRRKVLGALAAGGGLIVPEPLPGDG
QEAMEHAREHRFEGVVAKKRDSTYQPGRRSASWIKDKIWNTQEAVIGGWRQGEGGRTSGI
GALLLGVPGPNGLQFAGRVGTGFTEKELARLKDMLAPLHTEESPFGQPLPKLDAKGVTFV
RPELVGEVRYSERTADHRLRQPSWRGLRPDKSPEDVVWE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggatggcgtcacggagcgctatgagcgggttcggctgacgaaccccgacaaagtgctg
tatcccgccaccggcaccaccaaagccgaggtgttcgactactacctcgacatcgccgag
gtgatgcttccccacctggccggccgcccggtaacccgaaagcgttggcccaacggggtg
gcgcagacgtcgttcttcgaaaagcagttggcgtcttcggctccgagttggctggagcgc
ggcaacatcgcgcacaagtccgggaccaccacgtacccgatcatcaatacccgcgagggt
ctggcctggatcgcccaacaggccgcgctggaagtgcatgtgccgcaatggcggttctcc
gccgacggcagccagggcccggctacccgcatcgtgttcgatctggatccgggtgagggc
gtgacgatgccgcagctgggcgaggtcgcccaggcggtacgcgatctcatggatgacatc
gggctgacgacgtacccgttgaccagcggcagcaagggcctgcatctgtatgtgccgctg
gccgaaccgatcagttctcgcggtgcctcggtgctggccaagcgcgtggcccaacaactc
gaacagtcgatgccgactctggtcaccgccaccatgacccgcagcgtgcgggcacagaag
atatttctggactggagccagaacaacggcgccaagaccacgatcgctccgtactcgctg
cgcgggcgcgagcacccgaccgtcgccgcgccacgcacctgggacgagatcgccgacccg
gatctgcgtcaactgcgattcgatgaggtgttgcaacgggtttacgatgacggcgacctg
ttggacggcctcgacgcggacgcaccccggggcgacaaactcaccacctaccgcagcatg
cgggatgcgggcaagactcccgaaccggtgcccccggatgttccgccgaccggaaacaac
gaccggttcgtgatccaggaacatcacgcccgacggctgcattatgacctacggctggaa
cgcgatggcgtgctggtcagttgggcggtgcccaagaaccttcccgagaccaccgcggtg
aatcaccttgccgtgcataccgaagaccacccgatcgagtacctgaccttccacggcacg
attcccaagggagagtatggcgccggggacatggtcgtctgggacacgggcacctacgag
gcggagaagttccgggtcagcgacgaccccgaggcccgcaacggtgaggtgatcttcacc
ctgagcggtgggaagatcgacggccgctacgcactgatccagaccgagggcaagaactgg
ctggcgcaccggatgaaggaccagaagtcggccacccccgagcccaaggacttcgcaccg
atgctgtccaccgaggggtccgtcgcgaaactcacggccggccagtgggcgttcgaggga
aaatgggacggctaccggctgctggtggaagccgatcatggccgcctgcaactgcgttcg
cgcagcgggcgcgacgtcaccgccgagtacccccagttggaggtgctggccgccgatctc
gccgaccatcacgtggtgctcgacggcgaggtggtggcactcgacgactccggggtgccc
agcttcggcgcgatgcagaaccgggcccgctccacccgcgtcgaattctgggcgttcgac
atcctgtggctcgacggccgctccctgttgcgcgccaagtactccgaccggcgaaaggtg
ctgggcgcgttggctgccggcggtggtctgatcgtgcccgaaccgctgcccggggacggc
caggaagccatggagcatgcccgcgagcaccggttcgaaggcgtcgtcgccaagaagcgc
gactcgacctatcaaccgggccgacggtcggcgtcctggatcaaggacaaaatctggaac
acccaggaggcggtgatcggcggctggcgtcagggggagggcgggcgcaccagcggcatc
ggtgcgctgctgctcggtgtcccgggccccaacggacttcagttcgccggccgggtcggc
accgggttcaccgagaaggaactggccaggctgaaggacatgctggcgccgctgcacacc
gaggaatctcccttcggccagccgttgccgaagctcgacgccaaaggggtcacgttcgtg
cggccggaactggtgggggaggtgcgctacagcgagcgcaccgccgatcaccggttgcgc
cagccgagttggcgcgggctgcggccggacaagtcgccggaggacgtggtgtgggaataa
DBGET
integrated database retrieval system
