Mycolicibacterium alvei: MALV_50100
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Entry
MALV_50100 CDS
T06961
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
malv
Mycolicibacterium alvei
Pathway
malv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
malv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MALV_50100 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
malv03019
]
MALV_50100 (deaD)
03009 Ribosome biogenesis [BR:
malv03009
]
MALV_50100 (deaD)
Enzymes [BR:
malv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MALV_50100 (deaD)
Messenger RNA biogenesis [BR:
malv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MALV_50100 (deaD)
Ribosome biogenesis [BR:
malv03009
]
Prokaryotic type
rRNA helicases
MALV_50100 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_19
adh_short
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BBX29885
UniProt:
A0A6N4V0T4
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All DBs
Position
5184834..5186645
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AA seq
603 aa
AA seq
DB search
MSSPDPDSGDTAPTFADLQIDPAVLKAVTDVGYESPSAIQAATIPAMLAGSDVVGLAQTG
TGKTAAFAIPILSKIDTSSRATQALVLAPTRELALQVAEAFGRYGAHLPAVNVLPIYGGA
SYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSNLDYLVLDEADEMLTMGFAEEVERI
LADTPEYKQVALFSATMPPAIRKITTKYLHDPVEVTVKAKTATADNITQRFIQVAGARKL
DALTRVLEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQSQRERTISALKD
GTIDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGHALLFVTPRE
RHLLKSIEKHTRSKVIEAELPSVDDVNAQRVAKFRDSITDSLNGPGLELFRRIIEDYERE
HDVPMVDIAAALALQSRNGEEFLMTEPPPEKRKERDRDRERGESRSERGQRPPREGLATY
RISVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRGDYSLVELPEKLPSKTLKALENTR
ISGMLINLEPAPGEHADRGDRGPRREYKGKSDYKGKSDYKGKSDHKDRSDYRDRSGKPHR
KTK
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgccagacccggattcgggggataccgccccaacgtttgccgacctgcagatt
gaccctgcggtgttgaaggcagtcactgatgtcggctacgagtcgccgtcggcgattcag
gccgcgaccattccggccatgctcgccggctccgacgtcgtcgggctggctcagaccggc
accggcaagacggccgcttttgccatcccgatcctgtccaagatcgacacgtcgagcagg
gccacccaggcgctggtgctggcgcccacccgcgagctggccttgcaggtcgcggaggca
ttcggccggtacggcgcgcacctgcccgcggtcaatgtgctgcccatctacggcggagcg
tcctacaccgtgcagctgtcggggctgcggcgcggcgcgcaggtggtggtcgggacgccg
ggccgcgtgatcgaccacctcgagcgcggcacgctggatctgtcgaacctggactacctg
gtgctcgacgaggccgacgagatgctcaccatgggtttcgccgaagaggtcgagcggatt
ctcgccgacaccccggagtacaagcaggtggcgctgttctcggccaccatgccgccggcc
atccgcaagatcaccaccaagtacctgcacgatccggtcgaggtcacggtcaaggccaag
accgccaccgccgacaacatcacccagcggttcatccaggtcgcgggcgcgcgcaagttg
gatgcgctgacacgggtgctcgaggtcgaggagggcgacgcgatgatcgtgttcgtccgc
accaagcaggccaccgaagaggtcgccgatcggctcaaggcccgcggtttcgcggccgcg
gccatcaacggtgacatcaaccagtctcagcgtgagcgcacgatcagcgcactcaaggac
ggcacgatcgacatcctggtcgccaccgatgtcgccgcccgcgggctggatgtcgaacgc
atctcgcacgtcgtcaactacgacatcccgcacgacaccgagtcgtacgtgcaccgcatc
ggccgcaccggccgggccggacgctctgggcatgcattgctgttcgtcaccccgcgcgaa
cggcacctgctcaagtcgatcgagaagcacacccggtcgaaggtcatcgaggccgaactg
cccagcgtcgacgacgtcaacgcgcagcgcgtggccaagttccgtgattcgatcaccgac
tcgctcaacggtccgggcctggagttgttccgccggatcatcgaggactacgagcgtgag
cacgacgtaccgatggtcgacatcgctgcggcgctcgcgttgcaatcacgcaacggcgaa
gagttcctgatgaccgagccgccaccggagaagcgcaaagagcgggaccgtgatcgcgaa
cgcggggaaagccggtccgagcgcgggcagcgtccgccgcgtgaaggcctcgcgacctac
cggatctcggttggcaagcggcacaaggtggggcccggtcacatcgtcggtgccatcgcc
aacgagggcggcctgcaccgcaacgagttcggtcacatcaccatccgcggggactactcg
ctggtggagttgccggagaagctgccgagcaagacgctcaaggcgctggagaacacccgg
atctcggggatgctgatcaatctggagcccgcgcctggcgagcatgccgaccgcggtgat
cgtgggccgcggcgtgaatacaagggcaagtcggactacaagggcaagtcggactacaag
ggcaagtcggaccacaaagaccgttcggattaccgcgaccgctcggggaagccgcaccgg
aagaccaagtga
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