Megalobrama amblycephala (Wuchang bream): 125250906
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Entry
125250906 CDS
T08212
Symbol
lig1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03030
DNA replication
mamb03410
Base excision repair
mamb03420
Nucleotide excision repair
mamb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125250906 (lig1)
03410 Base excision repair
125250906 (lig1)
03420 Nucleotide excision repair
125250906 (lig1)
03430 Mismatch repair
125250906 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mamb03032
]
125250906 (lig1)
03400 DNA repair and recombination proteins [BR:
mamb03400
]
125250906 (lig1)
Enzymes [BR:
mamb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125250906 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
125250906 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
125250906 (lig1)
DNA replication proteins [BR:
mamb03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
125250906 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
125250906 (lig1)
DNA repair and recombination proteins [BR:
mamb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
125250906 (lig1)
NER (nucleotide excision repair)
Other NER factors
125250906 (lig1)
MMR (mismatch excision repair)
Other MMR factors
125250906 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
125250906
NCBI-ProteinID:
XP_048019696
LinkDB
All DBs
Position
LG17:11028438..11053665
Genome browser
AA seq
994 aa
AA seq
DB search
MQRSIASFFQPMKGKEKSDGQAKVKAEPVKSPLKIQNGVQESDSPVKKVHKRSRVIIDSD
DEDQPVVKEQVPKQSEVQTAKPEKISDVTKAASTPVSPKTPITPKTPITPKTPVTSSASV
AVVTPASSGTPGTPATPTSTSPSGIPKRKTARKQFPKRKLESRSDGEGTKEEEGKEVDGG
QESKRARVGASPGQTENEMMEVEEKSTDGKTVVDEQKDEDEAKTSEVVDSAKNEMKQKDK
NDKKQEKKINEKNAKKEKIEDKKKKEDNSPERVVKKEKGTEDEGGSAKKKPISSFFAPRK
AAVKLEKEERNAGEKKKDGEISDILEQKETKSEKGVDSAVQSQYDPSRAQYHPIDHACWK
KGQKVPYLAVARTFEKIEEDSGRLRNIETLSNFLRSVILLSPDDLLCCVYLCLNQLGPAY
QGLELGVGDTVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPASLTAG
GVFNKLKEIANMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAA
LSQAVCLTPPGQEFPPAVLDAGKGMSTENRRVWLEEKALILKQTYCEMPNYDAIIPVLLK
EGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHILENG
EVRVFSRNQEDNTSKYPDIISRIPQVKKENVRSCVLDSEAVAWDREKKQIQPFQVLTTRK
RKDVDASEIKVQVCVYAFDLLYLNGESLVREPLSKRRALLRESFEEKEGEFVFARSLDAD
NTEAIAEFLEQSVRDSCEGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVI
GAYLGKGKRAGSYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRP
YYRVDQSAEPDVWLEAVQVWEVKCADLSLSPIYKAAMGLVDPEKGISLRFPRFLRIRDDK
KPEDATTGSQIADLYKKQQQIQNQGEKPDLEDYY
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatagcgtcattctttcagccaatgaaaggcaaggagaagagtgatgga
caggccaaagtaaaggccgaacctgtgaaaagtcccctcaaaattcagaatggcgttcag
gaaagtgattcgcctgtaaagaaggttcataaacgcagtcgagtaatcatagacagtgat
gatgaagatcagccagtggttaaagagcaggtgcctaaacagagtgaagttcaaacagca
aagccagagaagatttctgatgttacaaaggctgcctccactcctgtatctccaaaaact
cccataaccccaaaaacacccataaccccaaaaactccggtcacttcaagtgcctctgtt
gccgtggtaacccctgcttcctcaggcactccaggaactccagcaactccaacatcaact
tcaccgtcaggcattcccaaacgcaagactgcccgcaagcagttccccaagaggaagctg
gaaagcaggagcgatggagaggggacgaaagaggaggaagggaaggaagtagatggaggc
caggagagtaagagagcacgagtgggggcctcacctgggcagacagaaaacgaaatgatg
gaggtggaagagaagagcacagatggaaagactgtagtggatgaacagaaagatgaggat
gaagcaaaaacgagtgaagttgtggacagtgctaaaaatgagatgaaacagaaggataaa
aatgataaaaagcaggagaaaaagataaatgaaaagaatgcaaagaaagaaaaaatagaa
gacaagaaaaagaaggaagataacagtcctgaaagagtagtgaaaaaagagaaaggcaca
gaagatgaggggggatcggccaaaaagaaacctatcagcagcttttttgcacccagaaag
gcagctgtaaaactggaaaaagaggagcgcaatgcgggagagaaaaagaaagatggagaa
atctctgatatcctggaacagaaagagacgaaaagtgaaaagggggtggattctgcagtc
cagagccagtatgatccctccagagcacagtaccatcccattgaccacgcctgctggaag
aagggccaaaaagtgccatatttggctgtcgctcgcacctttgaaaagattgaagaggat
tcaggaaggctgagaaacattgaaactctttccaactttttgcgctctgtaattcttctc
tctccagatgacctgttatgttgtgtatacctgtgtctgaaccagctcggccctgcgtat
cagggtctggagctgggcgtcggggatactgtcctgatgaaagccgtcgctcaagcaact
gggcgacagttggacaaaatcaaggcggaggctcaggagaaaggtgacctgggattggtt
gctgagagttcccgcagcaaccagagaatgatgtttgcaccagccagtctgacagcaggg
ggtgttttcaacaaactgaaagagattgctaacatgagtggaaactctgcaatgaataag
aagattgacattattaaaggcttgtttgtggcctgtcggttttctgaggcccgttacatt
gtgcggtcattggctgggaagctgcggatcggattggctgagcagagcgttctcgccgct
ctcagtcaggctgtgtgtctgacgcccccgggccaagagttcccaccagctgtgctggat
gcagggaaaggaatgagtacggaaaacaggagagtgtggctggaggagaaagcactgatc
ctcaaacagacatactgtgagatgccaaattatgatgcaatcatacctgtattgctgaag
gagggcatagatgaactgccaaatcactgcaagctcaccccaggtgtgcccctgcgaccc
atgttagctcacccaactaaaggggtcggtgaggtaatgaaacgttttgatgaggcatct
ttcacctgcgaatacaaatatgatggagagagagcacagatccatattcttgagaacgga
gaggtgcgcgtttttagccgaaaccaagaggacaacacaagcaaataccccgatattatc
tcaagaatcccacaggtgaaaaaagagaacgttcgctcctgtgttctggattcagaggcg
gtggcctgggacagagaaaagaaacagatccagccgtttcaggtcctcaccacaaggaag
aggaaggatgttgatgcatccgagatcaaggttcaggtatgcgtctacgcctttgacctg
ctgtacctcaacggagagtctttggtgcgagagcctctaagcaaacgcagggctctgtta
cgggagagttttgaggagaaagaaggagagtttgtttttgctcgatccctggatgctgac
aacacggaagcgatcgctgagttcctggagcagtctgtacgagattcttgtgagggtcta
atggtgaaaacattggaaaaacatgcaacttatgaaattgccaaacgatcccacaactgg
ctcaagctgaagaaggactatctggagggtgttggagacacagtggatctgtgcgtgatt
ggtgcttatctggggaaggggaagagagcaggcagctatggagggtttctactggcctgt
tacgatgaggagaatgaggagttccagtctgtctgcaagattggaacaggcttcaaagat
gaagatctggagcagcattacaatttcttaaaggagcacattttacctaaaccacgcccg
tattatcgtgtggaccaatcagcagagccggatgtctggctagaggcagtgcaagtgtgg
gaggtgaaatgcgctgatctttcactgtctccaatctacaaggcagcaatgggattggtg
gacccagagaaaggcatttcactccgtttcccacgattcctgaggattagagatgacaaa
aaaccagaggatgccaccacagggtcacagattgctgatctctacaagaagcagcagcag
attcaaaatcagggtgagaaaccagatctggaggattactattga
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