Megalobrama amblycephala (Wuchang bream): 125265703
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Entry
125265703 CDS
T08212
Symbol
dhx38
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125265703 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mamb03041
]
125265703 (dhx38)
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125265703 (dhx38)
Spliceosome [BR:
mamb03041
]
Complex C
Other components
Step II factors
125265703 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_16
Flavi_DEAD
AAA_30
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
125265703
NCBI-ProteinID:
XP_048042042
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All DBs
Position
LG3:complement(54463393..54499984)
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AA seq
1258 aa
AA seq
DB search
MEEMEDDSSLHRLEGSDPSVQVGGLIVKKKSASTEQHVFRAPAPRTSLLGLDLLAAQKRK
EREGKEKLDDQPKKSKVSSYKDWEEGKSDSGSDDETEEDGESRNGKKERKYRVTGSETPS
NPGGVSEEFKRKNQQREKDRREHGVYASSKEDKSRDKDRSRDRDRDHDRYRDRDRRKDRD
DREGSRSRGSSSSRSERGDGSVRSERSQRDGTSERMSRGTRRDEPESPRNKLKDTPSRSS
WDEDDSGYSSSRHSHWESPSPAPSHRESERSHRSVRDSERRDRSSKPQYPADTPLPTPSY
KYNEWANDRKHLGSTPRLSRGKGDKREDREDGILFNNEDEKEQWEEDQRQADRDWYMMDE
GYDEFHNPLTSSSEEYVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRL
EVDEDFEEDNATRVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQLV
RRHREQKERKKAQHKHWELAGTKLGDIMGIKKSEEEGSDGKAVGEDGNVDYRAEQKFADH
MKERNEASSDFSKKKTLLEQRQYLPIFAVRQQLLNIIRDNNIVIVVGETGSGKTTQLTQY
LHEDGYTGYGMVGCTQPRRVAAMSVAKRVSEEINSNLGEEVGYAIRFEDCTSEKTVIKYM
TDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIVTSATMD
SDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMSGDILIFMP
GQEDIEVTSDQIVERLEDLENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIA
ETSLTVDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQCYRL
YTQSAFKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLW
ILGALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMACSADILIIVSMLSVPSIFYRPK
GREEESDQVREKFSVPESDHLTYLNVYLQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQL
KDIMVQQKMNLISSGSDWDVIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSALF
GMGYTPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHANKSRQENRRRAKEE
ISNMEEEMSLAQQQILARKEEQERKNNLGSVRSIKICTPGRKEETPMTPKRTPARFGL
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggaagagatggaagatgattcctccctgcatcgactagaagggagtgaccccagtgtg
caggtcggggggctgatagtgaagaagaagagcgcttcaacagaacagcatgtgttcaga
gcgcccgctccacgcacctcgctcctgggccttgatctgctggccgcccagaaacgcaag
gagcgtgaggggaaggaaaagctggatgatcaacccaagaaatccaaggtgtcgtcctac
aaggactgggaggagggaaaaagtgattcggggtctgatgatgaaactgaagaggatggc
gagagcaggaatgggaaaaaagaaaggaagtaccgtgtcactggctcagaaaccccatca
aacccaggaggggttagtgaggagttcaagcggaaaaatcaacagagggagaaagacaga
cgtgaacatggggtttatgcatcctccaaagaagacaagagcagagacaaagacagatcc
agggaccgggacagagatcacgaccgctaccgtgaccgagacagaagaaaagacagagat
gatcgggaaggcagccgcagccgtggatccagcagcagtcgctccgagcgcggtgacggc
agtgtgaggagtgaacgctctcagagggacggcacgtccgagcgcatgagccgtggtact
cgccgcgatgagcccgaatcaccccgtaacaaactcaaagacactccgtcacgctccagc
tgggatgaagatgacagcggatattccagctcacgtcactcacactgggagagcccgtct
cctgctccctcgcaccgggagtccgagcgcagccatcgttcagtccgcgacagtgagagg
agagacaggtcaagtaaacctcaatatccagcagatactcctctaccaactccatcatat
aagtacaacgagtgggccaatgacaggaagcatcttggctccactccacgcctgtccaga
ggaaaaggagataaaagggaggatagagaggacggcatcctgtttaataatgaagacgag
aaggaacagtgggaggaagatcagaggcaagctgatcgagactggtacatgatggatgaa
ggttatgatgagtttcacaacccattgacgtccagctctgaagagtatgtgaagaagagg
gagcagatcctacagaagcagacccagaaacgcatctcagcacagaagcggcaaatcaat
gaggacaacgaacggtgggagaccaaccgcatgctcaccagtggagtggttcagcgcttg
gaggtggacgaggactttgaggaagacaatgcgaccagagtccacctacttgtccataac
ctcgtgccacccttcctggacgggaggattgtcttcactaagcagcctgagccggtcatt
ccagtgaaagacgccacatcagacatggccatcatctcccgcaagggaagtcagctggtc
cgacgacacagagagcagaaagagagaaagaaggcacaacacaaacactgggagctcgct
ggcaccaaactgggggacatcatgggaatcaagaaatcagaggaggagggatcagatgga
aaagctgttggagaagatggaaatgtggattacagagcggagcagaagtttgctgatcac
atgaaggagaggaatgaagcgagcagtgatttttctaagaagaagactctgttagagcag
agacagtatctgcccatctttgctgttcgccagcagctgctcaacatcatcagggataac
aatattgtgattgtggtgggagaaacgggcagtggtaagacgactcagctgacacagtat
cttcatgaggacggttacaccggctatggcatggtgggctgcacacaacctcgcagagtg
gcagccatgagcgtggccaagagagtcagtgaagaaataaacagtaacctgggagaagag
gttggttatgccatccgttttgaagactgtacatcagagaagactgtaataaaatacatg
acggatgggattcttctgagggaatctctgcgggagtcagacttggaccactatagcgct
gtaatcatggacgaggcccatgagcgctccctcaacactgacgtgctctttgggctgctc
cgagaggtggtgtctagacgctcagacttgaagctcattgtcacatctgccaccatggac
tcggacaaatttgcggcattcttcggcaatgttcctattttccacattcccggcaggacg
ttcccagtggatatcttgttcagcaagactcctcaggaggactatgtggaggcggctgtg
aaacaggccttacagattcatctcagcgggatgtcgggtgacatcctcatcttcatgcct
ggtcaggaggacattgaggtaacatcagatcagattgtggagcgattagaggatctagag
aacgctccggccctggcagtgctgcccatctactcccagctgccttcagacctgcaggcc
aagatcttccagaaggctcctgatggagtgaggaagtgtattgttgctacaaacatcgcc
gagacgtctctgacagtggacggcatcatgtttgtggtggattctggttactgcaaactg
aaggtgttcaaccctcgcattggcatggatgcgctgcaggtgtacccaatcagtcaagcc
aatgccaaccagcgggctggcagagcgggcagaacaggcccaggacagtgttacaggttg
tacactcagagtgccttcaagaatgaaatgctcaccaccaccatcccagagatccagcgc
actaacctggccaatgttgtgctgctgctcaagtcactgggagtgcaagaccttctgctc
ttccacttcatggatccaccacctgaagacaacatgctgaactccatgtaccagctgtgg
atcttgggagctcttgacaacacaggcgctctgacacccaccgggcggctcatggtggag
tttcctctggatccggctctgtcgaaaatgctgatcgtgtcatgtgacatggcctgcagt
gctgacatccttatcatcgtctccatgttgtcagtgccatccatcttctacagaccaaag
ggtcgagaggaggagagtgaccaggtgagagagaagttctcagtgcctgagagtgatcac
ctgacatacctcaacgtttacctgcagtggaagaacaacaattactccagcatatggtgt
aacgatcacttcatccacaccaaagccatgcgtaaggtgcgtgaggttcgatctcagctc
aaagacatcatggtgcagcagaaaatgaacctgatctccagcggctctgactgggatgtg
atcaggaagtgcatctgtgctgcgtactttcaccaggcagctaaattaaagggaataggg
gagtatgtgaatgtgagaactgggatgccctgccatctgcaccccaccagcgctctgttc
gggatgggctacacccctgactacatcatctaccatgaattggtcatgaccacaaaggag
tacatgcagtgtgtgacggcagtggacggcgagtggctggctgagctcgggcccatgttc
tacagtatcaaacatgcaaacaagagcagacaggagaaccgaaggagagccaaggaggag
atctccaacatggaggaggagatgtcccttgcacaacaacagatccttgcacggaaagag
gagcaggagaggaagaataacctgggcagcgtcaggtcaatcaagatctgcaccccagga
aggaaagaagaaacgcctatgacgccaaaacgaaccccggcccgatttggcttatag
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integrated database retrieval system
