Megalobrama amblycephala (Wuchang bream): 125272324
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Entry
125272324 CDS
T08212
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125272324 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mamb03400
]
125272324 (lig4)
Enzymes [BR:
mamb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125272324 (lig4)
DNA repair and recombination proteins [BR:
mamb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
125272324 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
125272324
NCBI-ProteinID:
XP_048053040
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All DBs
Position
LG7:31830152..31835927
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AA seq
910 aa
AA seq
DB search
MMEGASKSDTTPQASVAAQVPFIHLCTVLEKIQKTKLRPDKGKILKEFIDSWRNFHAALH
KDISNTTDSFYAAMRLIVPPFERERMAYGIKENMLAKLYIEVLGLPKNGPEANKLLNYRA
PTTSQGEAGDFALTAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLHL
ITQSSALEQKWLIRMILKDMKLGISKETILQVFHPDATELYNVTTDLNKVCLQLHDPSVS
LSEVSIDLFSAFKPMLAAVANIRQIEKQMGNRPFYIETKLDGERIQLHKAGDVYKYYTRN
SYEYTQQFGASPLEGSLTPYIHNVFKPHVVNCILDGEMMAYNPKTETFMQKGSKFDIKKL
MDDSELQTCFCVFDVLLVNNQKFGNEPLKKRYETLETVFTPIKGRIQQVSKSEGKTMQEV
VNFLNEAIDNLEEGIMIKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRSGMLSHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYNKNNP
PAAILCGTEKPEVYIEPRNSVIIQVKAAEIVSSDMYKTNCTLRFPRIERIREDKEWHQCM
TLTDLSQFRSRASGKLASRHLHIQEDQPEKKKRKFVAKPKKTIGVISHFKSQDLSAVAKE
TDMFEDVEFCVINGDDEHSKADLEKGVARCGGIVVQNPGKDTYCVIAAVQNMRVKNLISS
DQHDVVWAAWLVECLENKQVIPWQPRHMIHMSPSTRDHFAKEYDQYGDSYYVDTDEQQLM
EVFERIGPTQAKCPSVARIEAENAWDDLPTSIFRPYSAYFDRCADLGDPKSIIRGTCLDT
RALEFRFHGGTVVEKLKEGISHVIVEGERRALDLKTLRRLYTKKFKIVRESWVTDSIKAG
HVEDEIDYLI
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaggagcctcaaaaagtgataccacaccacaagcctctgttgctgcacaagtt
ccgttcatccacctctgcacagttctggagaagattcaaaagactaaactacgaccagac
aaaggcaaaatcctaaaggagtttatagattcatggaggaattttcacgcagcacttcac
aaggacatttccaacactacagattcattttatgcagcaatgcgtctcattgtgcctcca
tttgagcgagagcgaatggcttatggtataaaagagaacatgcttgccaaactgtatatt
gaggttttaggcttacctaaaaatggacctgaggcaaacaaacttctaaattacagagct
ccaaccacatctcaaggagaagcaggtgactttgcccttacagcctactttgtcctgaaa
aaaagatgcacaagtcaggggaatttaagcattaaggaagtcaatgacttcttggattct
gtagctatcaacaatgccagcaaacagaaggatcaagtgaagaaaagccttttgcatcta
ataactcaaagctcagctttggaacagaagtggctcattcgaatgatcctcaaggacatg
aaacttggcattagcaaggagacaattcttcaggttttccatccagatgcaacagaactc
tacaatgtcaccacagatctgaataaagtgtgcctacaacttcatgatccatctgtgtcc
ctcagtgaggtctccattgatctgttttctgcgtttaaaccaatgctggctgctgttgcc
aacatcagacagatagagaagcaaatgggcaaccggccattctatattgagacaaagctc
gatggtgaacgcattcagctgcacaaagctggagatgtttacaaatattatacaaggaac
tcttatgagtacacgcaacagtttggagcttctccactagagggctccctcacgccatac
attcacaatgtcttcaaacctcatgtggtgaactgcatactggatggagagatgatggct
tataaccctaaaactgagaccttcatgcagaagggcagtaagtttgatattaaaaagctg
atggatgactctgagttgcaaacctgtttttgtgtatttgatgtcttgttagtgaacaat
cagaagtttggaaatgaacctctcaagaagcgctacgaaactcttgagactgtcttcacc
cccatcaaaggccgtatccagcaggtctctaaatctgaaggcaaaaccatgcaagaagta
gtgaatttcctcaatgaagccattgacaatctggaagaagggattatgattaaggatccc
atgtccatctacaaaccggataaacgtggtgaaggatggctgaaaattaagcctgaatat
gtggacggtctgatggatgaactcgatctgctgatagtgggaggctactggggtaaaggc
aggagaagcgggatgctctctcattttctctgtgcggtagcagaggtgccaagtcctggg
gagaagcctacagtattccacaccctctgccgcattggatcaggctacactatgaaagaa
ctgtacgatcttggtctgaagttagccaaacattggaaagtttacaacaaaaataatcct
ccagcagccattttgtgtggaacagaaaaaccagaggtttacatagaaccacgcaactca
gtcatcatacaggtcaaagcagcagagatcgtttctagtgatatgtataaaaccaactgc
acattgcgtttccccagaatagaaagaatcagagaagacaaagagtggcatcagtgcatg
accttgaccgacctgagccagttccgctccagggcttctggtaagctggcatccagacat
ctgcacatccaagaggaccagcctgaaaaaaagaagcgcaaatttgtagccaagcccaag
aagaccatcggagtcattagccactttaaatctcaggatttatcagcagtcgccaaagag
acggatatgtttgaagatgttgagttttgcgtgataaatggcgatgacgaacattccaag
gcagatcttgagaaaggtgtggcccgttgtggaggcattgttgtgcaaaaccctggaaaa
gacacgtactgtgtgattgcagctgtgcagaacatgagagtcaagaacctcatctcttca
gaccagcatgatgtggtgtgggctgcttggcttgtggagtgtctggaaaataagcaggtt
ataccatggcaaccacgtcacatgatccatatgtcaccctccacaagggaccacttcgct
aaagagtatgatcagtatggggacagttattatgttgacacagatgaacagcagctgatg
gaagtctttgaaaggattggccccacacaagccaaatgtccgtctgtggctcggatagaa
gcagagaatgcctgggatgacttgcccactagcatttttaggccttacagtgcatacttt
gaccggtgtgctgacttaggagatccgaaatccattatccggggtacatgtttggacaca
cgtgcgttagagttccgatttcatggtggtacagttgtggaaaaattgaaggaaggaatc
tcgcatgtcatagtagaaggtgagagaagggctttggacttaaagacactgaggcgactt
tatactaagaagtttaaaattgttcgggaatcttgggtgaccgattccatcaaagcaggc
catgtagaggatgagattgactaccttatataa
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