Megalobrama amblycephala (Wuchang bream): 125278163
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Entry
125278163 CDS
T08212
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mamb03041
]
125278163 (ddx1)
03016 Transfer RNA biogenesis [BR:
mamb03016
]
125278163 (ddx1)
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125278163 (ddx1)
Spliceosome [BR:
mamb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125278163 (ddx1)
Transfer RNA biogenesis [BR:
mamb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125278163 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
125278163
NCBI-ProteinID:
XP_048062978
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All DBs
Position
LG11:26771068..26778442
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AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRSAVKTGGAVFNKWQMNPYDRSPAFAIGADGLCCQSREFKEWH
GCRSTKGVTKGRYYYEVSCHDQGLCRVGWSTAQASLDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDVDKGHVSFSKNGNDLGLAFEIPPQLKNQPFFASCVLKNAELKF
NFGDEPFKNQPKDGYVALNQASDGHVVKSSQTGSAKVSQVKSSSNAPKALIIEPSKELAE
QTLNNVNQFKKYVDNPKLRDLLIIGGVAAKEQLSILESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLTAGYTDFIMRVYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADRLWERLGKSHIRTDEVHAKDDTRPGAN
TSEMWSEAIKILKGEYAIRAIKEHKMDQAIIFCRTKIDCDNMEQYFIKQGGGPDKKGHQF
SCVCLHGDRKPNERKYNLERFKKQEVKFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRADRMGLAISLVAMEKEKVWYHVCASRGKGCYNTKLKENGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRATGGGLYKGHVDILAPTVQELANLER
EAQTSFLHLGYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttcggcgaaatgggagtaatgcctgaaattgcacaggcggtggaagaaatg
gactggctgttgccaacagacattcaggccgaatccatccctctgattctgggtggagga
gacgtgctcatggccgctgagactgggagtggaaaaactggagccttcagtattccagtc
atccaaatagtctatgagactcttaaagaccagcaggaggggaagaagggacgtagtgcg
gtgaagacaggaggagcagttttcaataaatggcagatgaacccctatgacagaagccca
gcatttgctattggtgctgatggcctgtgctgtcagagcagagagttcaaagagtggcat
ggctgtcgttccaccaaaggagtcacaaaagggaggtattattatgaagtgtcctgtcac
gatcaagggctgtgcagggtgggctggtccactgcccaggcatcactggacttgggaacg
gataaatatggatttggctttgggggaactggaaagaaatctcacaataagcagtttgat
agttatggagaggaattcactatgcacgacaccatcggatgctacatagatgtggataaa
ggccatgtgtcattctccaaaaatggcaatgatctgggtttggcttttgagattcctccg
caactgaaaaatcagcctttctttgcttcctgtgtgctgaagaatgctgaactgaagttc
aactttggtgatgaacccttcaaaaaccaacctaaagatggatatgtggccctgaaccag
gcttcagatggtcatgtggttaaatccagccagacaggcagtgctaaagtgagtcaggtc
aaatccagttctaacgcccccaaagctctcatcattgagccgtctaaagagctggctgaa
caaaccctcaataatgtcaaccagttcaagaaatatgttgataatcccaaactaagagat
cttctgataatcggaggagtggccgctaaagaacagctctccattttagaaagtggggtt
gacattgtggttgggaccccaggcagactggatgatctcatatcaacaggaaagctggat
ctatcccaagtccgcttcctggtgctggatgagtgtgatggactcctcacagctggctac
accgacttcatcatgagggtctacaaccagatccctcaggtcacctcagatggcaagaga
ctacaggtgattgtttgctctgccacgctgcattcattcgatgtgaagaagctctcagag
aagatcatgcatttccccacatgggtggatctgaagggagaagattctgtaccagaaacg
gtccatcacgtggtggtgccagtcaacccaaaagctgacaggctttgggagagactggga
aagagccacatcaggactgatgaagttcatgccaaggatgacacacgacctggagccaac
acttcagagatgtggtcagaggccattaagattctgaagggagagtatgcgatcagagcc
attaaggagcataagatggatcaggccatcatcttctgcaggacaaagatcgactgcgac
aatatggagcagtacttcatcaagcagggaggaggtccagacaagaaaggacaccagttc
tcttgtgtctgtcttcatggtgacagaaaaccaaatgagcgcaaatataacttggagcga
ttcaagaaacaggaagtaaagtttctgatttgcacagatgtggctgctagaggaatcgat
atccatggtgttccttatgtgataaatgtgactctaccagatgagaagcagaactacgtt
catcgcattggaagagttggcagagcggacaggatgggtttggctatatccctggttgct
atggagaaagagaaagtgtggtaccacgtttgtgccagcagaggaaaaggctgctataac
accaaactcaaagagaacggaggatgcactatttggtacaatgagaaagagttgttgtca
gaaatcgaggaacatctgaaatgcaccattactcagtgtgaacctgacatcaaagtacct
gttgacgaatttgacggcaaagtaacatacgggcagcgcagggctaccggcggtggtctc
tataagggccatgtggatatattggccccaaccgtacaggaactggccaacctggagaga
gaggcgcaaacttccttccttcatctcggctatctacccaaccagctctttaaagcattc
tag
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