Methylomusa anaerophila: MAMMFC1_01902
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Entry
MAMMFC1_01902 CDS
T05819
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mana
Methylomusa anaerophila
Pathway
mana03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MAMMFC1_01902 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mana03400
]
MAMMFC1_01902 (mfd)
Enzymes [BR:
mana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MAMMFC1_01902 (mfd)
DNA repair and recombination proteins [BR:
mana03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MAMMFC1_01902 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBB91231
UniProt:
A0A348AJI3
LinkDB
All DBs
Position
2094978..2098295
Genome browser
AA seq
1105 aa
AA seq
DB search
MLTLFATLRSDQQLRLAEKAYAAKCKQTLIYGVTGSQKSALIASAYQAAPRPTVIVATRS
EGTEKLKSDLMAFLPETPVYDLPALDIVTFTVAAKSMELAARRMDVLSRMARGEKAIFIA
VAEAAVQKVLPKQEFLNNRMSLSRGEMVAREELIATLVHFGYERVDQVDSPGQFCVRGGI
IDIFAINRNLPVRIEFFGDEADSLREFDPVTQRSVTEIDLLDIMPVTEPETSGKPSVFLS
YLPADASVIFDESSRIREQISQLVKENPELKQQVFGWNELTAAAQAVNVIYLSLLLQKIP
NTEPEEIISITAKGVAPFHKQIELLVTELKGWQEKKYSTVIFMTTPDKAVSLQRNLVQEG
VSAILAQDPQTPLIPGTVMVFSGAVSDGFEMPNARLAVLTELDIFGRQKKKRRPRLGKDQ
QISYFRDINIGDYVVHVNHGIGKYVGVKTLEVGGVHKDYLHIRYAGDDKLYVPTDQVHLL
QKYIGAEGDVPRLSKMGGSDWIKAKSKAKAAVADMAKELVALYAERKIQPGYPFLPDTPW
QQDFEDAFPFEETPDQLAAIAEVKRDMEEARPMDRLLCGDVGFGKTEVAIRAAFKAVMSR
KQVAVLVPTTVLAQQHFQTFCARFSGFGPVVDVISRFRSAREQKATLKRLALGQVDVLIG
THRILQADVAFKDLGLLIVDEEQRFGVAQKEKLKKWKASLDVLTLSATPIPRTLHMSLVG
ARDMSIIETPPEDRFPVQSYVVEYNEEIIREAIVREMKRGGQVYFVYNRVQTIDKVRERL
AEILPDAAIKTAHGQMAEEILEQVMLDFYEGRDEVLVCTSIIENGLDVPNANTIVVYDAD
HFGLSQLYQMRGRVGRSHRLAYAYFTYRRDKVISEVAEKRLQAIKEFAELGSGFKIAMRD
LEIRGAGNLLGREQHGHIVTVGFEMYCRLLDEAIQEIKTGQVVEPPPEPVLEFNIDAYLS
GDYISDAMNKIEIYQRIAAIRSEEHVQELLDELIDRFGEPPAPVVNLLNVARIKNTARHL
GVRSIIEQAGRVEIVFGDFPNVAPDGIVNARNLYPGKITFVPGPPQAVRLATARLSLPLF
EVLLKILTTLAGMENRGKVGAASRG
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgttgactttgtttgccaccctgcgcagcgatcagcagctacgcttggcagaaaaggct
tacgcggcaaaatgtaaacaaactttgatatacggagtcaccggttcacaaaaaagcgct
ttaatagcttccgcctaccaggcagcaccccggccgaccgtgatcgtggccacccgctcc
gagggcacggagaagctaaagtcggatttgatggcgtttcttcctgaaacgcctgtttat
gatctgccggcactggacattgtaacttttacggtggctgccaaaagtatggagctggct
gcacggcgcatggatgtcctaagccgcatggcacggggagagaaagccatctttatagct
gtggctgaagcggcagtgcaaaaagtattgcctaagcaggaattcctgaataaccgcatg
tctctgtcccgcggcgaaatggtggccagggaagaactgatagccactttggtccacttt
ggctatgagcgtgttgaccaagtggatagccccggccagttctgcgttcggggcggcatc
attgatatttttgccattaaccggaatttgccggtaagaattgaattctttggcgatgag
gccgactctttgcgggagttcgaccctgtaacgcagcggtcggtaacagagattgacctt
cttgatattatgccggtcactgaaccggaaaccagcggcaagccgtcggtctttctatcc
tacttgccggccgacgccagtgttatttttgatgagtcctcccgcatccgggaacaaata
agccaactggtaaaagagaatccggaactcaagcagcaagtgtttggctggaatgaacta
acggcggcggctcaggctgtgaatgtaatttatttgtcgctgttgctgcaaaagatacct
aacaccgagccggaagagatcatcagtattactgctaaaggtgttgcccccttccataag
cagattgaactgctggtaactgaattgaaaggttggcaggagaaaaaatatagcactgta
attttcatgaccacccccgataaggccgtttctttgcagcggaatctggttcaggaggga
gttagcgctattttggctcaggatccgcaaacccctctcattccaggtacggttatggta
ttttccggcgcagtgtccgatggatttgaaatgccaaatgccaggctggcggtattgact
gaactggatatattcggccggcaaaaaaagaaacggcggccccggctgggaaaagatcag
cagatatcctacttccgggacatcaacatcggggactatgtggttcatgtgaaccacggg
attggtaaatatgtaggggtgaaaaccctggaagtcggcggcgtgcacaaagactatctc
cacattcgctacgcgggggatgataagctatatgtgccgacagaccaggtccacttgctg
caaaagtatatcggagcggaaggagatgttccgcgcttaagtaaaatgggcggcagcgat
tggattaaagcgaaatccaaggctaaagccgcagttgccgacatggccaaggaactggtt
gcgctgtatgccgagcgtaagattcagccaggctacccatttcttcccgatactccctgg
caacaagattttgaagacgcattcccgtttgaagaaactcccgaccagctggcagctatt
gccgaggtcaaacgggacatggaagaagcccggcctatggaccggcttttatgcggtgat
gtgggctttggcaagacggaagtggccattcgggctgcgttcaaggctgttatgagccgt
aaacaggtagctgtcctggttcctaccactgtgttggcgcagcagcatttccaaacgttt
tgcgccagattttccggttttgggccggttgtggatgttatcagccggtttcgcagcgcg
cgggaacagaaggccaccctgaaacggctggcattaggtcaggtggatgtactgataggt
actcaccgtattctgcaggcggatgttgcttttaaggatttaggacttttgattgtggat
gaagaacaacggtttggtgtggcccagaaagaaaaacttaagaagtggaaagctagtttg
gatgttctcacattaagcgccacgcctattccgcgaactctgcacatgtccctggttggc
gccagagacatgagcattatcgagacgccgcccgaggatcgttttcccgtgcagagctat
gtggttgagtataacgaagagattatcagggaagccattgtgcgggagatgaaacgtggc
ggtcaggtatattttgtctacaaccgggtccagactattgacaaggtccgtgaacggctg
gccgaaatattgcctgatgctgctattaagacggcacatggccaaatggcggaagaaata
ttagagcaggtcatgctcgatttttatgaagggcgggatgaagtactggtgtgtaccagt
attattgagaacggcctggatgtacccaatgccaatacaatcgttgtttacgacgccgat
cattttggcctgtcccagctctatcagatgcgggggagggtagggcgctcccaccgtttg
gcttacgcatattttacctatcggcgggataaagttataagtgaagtagcggagaagcgt
ctgcaggctatcaaggaatttgccgaactgggatcgggttttaaaattgccatgcgtgac
cttgaaattcgcggcgccggcaaccttcttggccgggaacagcatggacatattgtcact
gttggttttgaaatgtattgccgtctattggatgaggccatacaggaaatcaaaaccggg
caagtggttgaaccgccgcctgagcctgtacttgaatttaatattgacgcttatctttcc
ggtgactacattagtgatgctatgaataaaattgaaatttaccagcgtattgccgctatc
aggagcgaggagcatgtacaggagcttttggatgaattgattgatcgtttcggcgaacca
ccggcaccggtagttaatttactgaatgtagcccgtattaaaaatacggcgcgtcatctg
ggtgttcgttccattattgaacaagcggggcgagttgaaatagtctttggcgattttccc
aatgtagctcccgacggaatcgtgaatgcccgcaatctatatcccggcaaaatcactttt
gttcccggtccgccgcaagctgttcgtctggcaaccgcccgtttatctttaccccttttt
gaggtattgctcaaaatattgacaaccttggccggcatggaaaaccggggtaaagtaggt
gcggcaagccgcgggtga
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integrated database retrieval system
