Methylomusa anaerophila: MAMMFC1_03304
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Entry
MAMMFC1_03304 CDS
T05819
Name
(GenBank) putative DNA ligase-like protein/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mana
Methylomusa anaerophila
Pathway
mana03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MAMMFC1_03304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mana03400
]
MAMMFC1_03304
Enzymes [BR:
mana01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MAMMFC1_03304
DNA repair and recombination proteins [BR:
mana03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MAMMFC1_03304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Isd_H_B_linker
UPF0270
Motif
Other DBs
NCBI-ProteinID:
BBB92609
UniProt:
A0A348ANG1
LinkDB
All DBs
Position
complement(3637621..3638559)
Genome browser
AA seq
312 aa
AA seq
DB search
MPNNISDKTTIEVAGKKLKLANLNKVFYPLTGFTKGQMLDYYIRIAPVLLPHLANRPLTF
KRYPNGVTGKFFYQKDCPVHRPEWVKTIPVWSEGNRKYINYCNAADLSTLIWAANLAVLE
LHTSLSLAPEIASPSLLVFDLDPGPPATIVDCAQVALWLKEMLAKQDLKSFPKTSGAKGL
QVYVPLNTPLSYDHTKSYARLLANRLQEQYPQKVVANMKKKLRSGKVFIDWSQNDEHKTT
VCVYSLRAGELATVSTPVTWEEVEAAWHENNPNSLVFEAQQVLDRVKSRGDLFGPLLGLK
QNLPATNQLGKS
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgcccaataatatttcggataaaacaacgattgaagttgcggggaaaaagttgaagctt
gccaacttgaacaaggttttctatccccttaccggcttcaccaaagggcaaatgctggat
tattatatccgtatagcaccggtccttttgccccaccttgctaacaggcccttaacattc
aaacgttaccccaacggcgtgacaggcaaatttttttatcaaaaagattgtcccgtacac
cgtccggagtgggtaaaaaccatcccggtatggagcgaaggaaaccggaaatacattaac
tattgtaatgccgctgatctgtcgactttaatatgggcagccaacttagccgtcttggag
cttcacacctccctttccctcgcacccgaaatcgccagtccgtctctcttagtgtttgat
ttagaccccggtcccccggcaaccattgtcgattgtgcccaggtagctctgtggctaaag
gaaatgctggccaagcaggatctcaaaagtttccccaaaacctccggcgccaaaggattg
caggtatacgttccactcaatacacccctaagctacgaccacaccaaaagctatgcccgc
ttactggctaaccgtttacaggagcaatacccccaaaaagttgttgccaatatgaaaaaa
aaactgcgaagcgggaaagttttcattgactggagtcaaaacgatgaacataaaaccact
gtttgtgtatattcattaagagccggagaattggccactgtatccaccccggtaacatgg
gaagaggttgaggccgcctggcatgagaataatcctaattcacttgtttttgaagctcag
caggttttggaccgagtcaaatcgcggggagatttgtttggtccgttacttggcttaaaa
caaaaccttccggccacaaaccaattgggcaaaagctaa
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